Gene Information

Name : tISRso6a (RSp0952)
Accession : NP_522513.1
Strain :
Genome accession: NC_003296
Putative virulence/resistance : Unknown
Product : transposase ISRSO3
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4584
EC number : -
Position : 1196996 - 1198060 bp
Length : 1065 bp
Strand : +
Note : predicted by Codon_usage; predicted by Homology; predicted by FrameD

DNA sequence :
GTGATCAGCTACGAGGATTACATGGAAGTACAGATTCTGCGTCGCCAGGGCTGCAGTTTGCGTGCGATCGCAACCGAGAC
TGGCATGGCCGTGAACACCATCAGGAAGTACCTGGTGTCCGGCGCGCCCGAGCGCAAGCCACGCGAGCCGGTGGTGGGCA
AGTTGGAGCCGTTCAAGGCCTTCATACAGTCCCGCGTTGACGCCGCACGTCCGGACTGGATTCCGGCGACGGTGCTGTTG
CGCGAGATCGAGGAGCGTGGGTACACCGGCAAGCTGCGCATTGTTCAGGAATACCTGCAAACGCTGCGGCCCGCCAGCCG
GCCCGATCCGGTTGTGCGGTTCGAGACGGAACCCGGCCAGCAAATGCAGATGGATTGGATCGAATTCCGCAAGACCGGGC
ACAAGCACGGCATGCTGGCGGCATTCGTTGCCACGTTGGGATACAGCCGAGCCAGCTATGTCGAGTTCGTTTCCGACATG
CGCCTGGAGACCTTGCTCACCTGCCATGTGCGTGCATTCGATGCCTTTGGCGGAGTCACCAAGGAGATCCTGTACGACAA
CATGAAGACGGTGATCCTGCAGCGCAATGCCTACGGTAAGCAACAGCATCGGTACCAACCAGGCTTTGCCGACTTCGCCA
AGCACTATGGGTTCGCGCCGCGCGTGTGCAAGCCCTACCGGGCGAAGACGAAGGGCAAAGTCGAGCGGATGAACGGCTAC
CTGCGCTACAGCTTCTGGGTCCCGTTGGCTTCCAAGCTCAAGCAGATCGGCTTGGCTGCGGACAAGGATCTGTGCAATCA
ACAGGTTGGCCTCTGGCTGCGGGATGTGGCCAATGTCCGCGTTCACGGCACGACGAAGCGCGTTCCCGTGGACGTCCTGA
GAGAGGAACGACCGCATCTGCTGCCAACGCCGGCACTCTATGCCGGGCGATCGGTGCGCGCCGGTGCAACGCCTCACGAG
ACGCCCAAGCCGGCCTCCAGGTTTGCGACGCCGGACTGGCATGTCTGCTTGCAGCACCCGCTGTCCGTCTACGATTCCTT
CTGCCAGCAGGGAGTCGCCGCATGA

Protein sequence :
MISYEDYMEVQILRRQGCSLRAIATETGMAVNTIRKYLVSGAPERKPREPVVGKLEPFKAFIQSRVDAARPDWIPATVLL
REIEERGYTGKLRIVQEYLQTLRPASRPDPVVRFETEPGQQMQMDWIEFRKTGHKHGMLAAFVATLGYSRASYVEFVSDM
RLETLLTCHVRAFDAFGGVTKEILYDNMKTVILQRNAYGKQQHRYQPGFADFAKHYGFAPRVCKPYRAKTKGKVERMNGY
LRYSFWVPLASKLKQIGLAADKDLCNQQVGLWLRDVANVRVHGTTKRVPVDVLREERPHLLPTPALYAGRSVRAGATPHE
TPKPASRFATPDWHVCLQHPLSVYDSFCQQGVAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 8e-69 45
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 3e-69 44
y2411 NP_669718.1 transposase Not tested HPI Protein 1e-68 44
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 3e-69 44
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 1e-68 44
unnamed CAA21403.1 - Not tested HPI Protein 1e-68 44
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 8e-69 44
api83 CAF28557.1 transposase Not tested YAPI Protein 8e-69 44
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 3e-69 44
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 3e-69 44
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 1e-68 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tISRso6a NP_522513.1 transposase ISRSO3 VFG1461 Protein 5e-69 45
tISRso6a NP_522513.1 transposase ISRSO3 VFG1607 Protein 2e-69 44
tISRso6a NP_522513.1 transposase ISRSO3 VFG1514 Protein 2e-69 44
tISRso6a NP_522513.1 transposase ISRSO3 VFG1626 Protein 2e-69 44