Gene Information

Name : RSc0550 (RSc0550)
Accession : NP_518671.1
Strain : Ralstonia solanacearum GMI1000
Genome accession: NC_003295
Putative virulence/resistance : Virulence
Product : response regulator transcription regulator protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 595202 - 595900 bp
Length : 699 bp
Strand : -
Note : -

DNA sequence : 
ATGCGCATCCTGATTGCTGAAGACGACGCCACCCTGGCCGACGGGCTGACCCGTTCGTTGCGCCAGGCCGGCTATGCCGT
CGACCGGGCCGCGGACGGCGCCGCCGCCGACGCGGCCCTTTCCGCGCAGACCGCGCAAACCTACGACCTGCTGATCCTCG
ATGTCGGGCTGCCGCGCCTGTCCGGCCTGGAAGTGCTCAAGCGGCTGCGCTCGCGCGGGGCGATGCTGCCGGTGCTGATC
CTGACCGCCGCCGACAGCGTCGACGAGCGCGTCAAGGGCCTGGACCTGGGGGCCGACGACTACATGGCCAAGCCCTTTGC
GCTGTCCGAGCTGGAGGCGCGCGTGCGGGCGCTGGTGCGGCGCGGCACTGGCGGCGGCGCCACGCTGGTCCGCCACGGGC
CGCTGGCCTTCGACCAGGTCGGACGCATCGCCTACATCCGCGACCAGATGGTGGACCTGTCGGCGCGGGAGCTCGGGCTG
CTGGAGATCCTGCTGTCGCGCGCCGGCCGGCTGGTCTCGAAGGAACAGCTGGTCGACCACCTGTGCGGCTGGGGCGAAGA
AGTCAGCAACAACGCGATCGAGGTCTACGTGCACCGCCTGCGCAAGAAGATCGAGGTGGACGGCATCCGCATCGCCACCG
TGCGCGGGCTCGGCTATTGCCTGGAACGCGTGAGCGTACCGGCTGCCGTCCATGGGTGA

Protein sequence : 
MRILIAEDDATLADGLTRSLRQAGYAVDRAADGAAADAALSAQTAQTYDLLILDVGLPRLSGLEVLKRLRSRGAMLPVLI
LTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGTGGGATLVRHGPLAFDQVGRIAYIRDQMVDLSARELGL
LEILLSRAGRLVSKEQLVDHLCGWGEEVSNNAIEVYVHRLRKKIEVDGIRIATVRGLGYCLERVSVPAAVHG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 3e-34 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSc0550 NP_518671.1 response regulator transcription regulator protein BAC0638 Protein 2e-25 48
RSc0550 NP_518671.1 response regulator transcription regulator protein BAC0083 Protein 6e-31 46
RSc0550 NP_518671.1 response regulator transcription regulator protein NC_002516.2.879194.p Protein 2e-27 46
RSc0550 NP_518671.1 response regulator transcription regulator protein BAC0487 Protein 6e-33 45
RSc0550 NP_518671.1 response regulator transcription regulator protein BAC0308 Protein 5e-28 44
RSc0550 NP_518671.1 response regulator transcription regulator protein BAC0197 Protein 6e-28 43
RSc0550 NP_518671.1 response regulator transcription regulator protein BAC0347 Protein 1e-28 41
RSc0550 NP_518671.1 response regulator transcription regulator protein BAC0111 Protein 2e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSc0550 NP_518671.1 response regulator transcription regulator protein VFG0473 Protein 4e-32 46
RSc0550 NP_518671.1 response regulator transcription regulator protein VFG1390 Protein 7e-30 45