Gene Information

Name : RSc3404 (RSc3404)
Accession : NP_521523.1
Strain : Ralstonia solanacearum GMI1000
Genome accession: NC_003295
Putative virulence/resistance : Virulence
Product : response regulator transcription regulator protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3681029 - 3681694 bp
Length : 666 bp
Strand : -
Note : -

DNA sequence : 
ATGCGAGTCCTGCTGATCGAAGACGATCCGATGATCGGCGCGGTGGTGGAGGCCGCGCTGCGCGATGCCGCCTATGCGGT
GGACTGGGTGCGCGACGGCCGGACCGCCGTCGACGTGAGCGCGCACCAGCACTACGACCTGCTGCTGCTCGACCTCGGCC
TGCCGGGCCAGGACGGCCACGCGGTGCTGCGCACGCTGCGCGCGCGGGACAACCCGGTGCCGGTGCTGATCCTCACCGCG
CGCGATGCGGTGGACGAGCGCGTGCGCGGCCTGGACGGCGGCGCCGACGACTACGTGCTCAAACCCTTCGAGATGGTGGA
ACTGCTGGCGCGCATGCGCGCCGTGCTGCGCCGCCGGGGCGGGGCCGCCAGCCCGGTGCTGAGCAACGGCGTGCTGTCGC
TCGACCCGGCCACGCACGAGGTGCGCGCGGGCGACGGCGAGCCGGTGCGCCTGTCGGGCCGCGAGTTCGCGCTGCTGCAA
GCGCTGATGCTGCGGCCCGGCGCCATCCTGTCGCGCGGCGAGCTGGAGGAGCGCATCTACGGCTGGGGCCACGAGGTGGC
CAGCAACGCGGTCGAGTTCCTCATCCACGCGCTGCGCAAGAAGCTGGGCGCGGAATCGATCAAGAACGTCAGGGGCGTGG
GATGGATGGTGTCCAAGGGCCGGTGA

Protein sequence : 
MRVLLIEDDPMIGAVVEAALRDAAYAVDWVRDGRTAVDVSAHQHYDLLLLDLGLPGQDGHAVLRTLRARDNPVPVLILTA
RDAVDERVRGLDGGADDYVLKPFEMVELLARMRAVLRRRGGAASPVLSNGVLSLDPATHEVRAGDGEPVRLSGREFALLQ
ALMLRPGAILSRGELEERIYGWGHEVASNAVEFLIHALRKKLGAESIKNVRGVGWMVSKGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 5e-25 47
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-21 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSc3404 NP_521523.1 response regulator transcription regulator protein BAC0197 Protein 2e-24 43
RSc3404 NP_521523.1 response regulator transcription regulator protein BAC0487 Protein 4e-25 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSc3404 NP_521523.1 response regulator transcription regulator protein VFG0473 Protein 1e-27 42
RSc3404 NP_521523.1 response regulator transcription regulator protein VFG0596 Protein 6e-22 41