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Name : gspF (RSc3116) Accession : NP_521237.1 Strain : Ralstonia solanacearum GMI1000 Genome accession: NC_003295 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 3354195 - 3355406 bp Length : 1212 bp Strand : + Note : Product confidence : probable; Gene name confidence : probable; predicted by Codon_usage; predicted by Homology; predicted by FrameD DNA sequence : ATGCCAGCCTTCCGCTACGAAGCCGCCGACGCCTCCGGCCGCACCGACCGCGGCGTCATCGAAGCCGACAGCGCCCGCCA GGCGCGCACCGCGCTGCGCGCCCGCGGGCTGACGCCGCTGGTGGTCGATGCGCTCGGTGCGCAGGCCGCCAAGCGCGCGG GCTCCCGTTTCGGCAAGCGGCTCTCGCCGCAGGAAAACGCCCTGGTGACGCGCCAGCTCGCCAGCCTGCTGGTCGCCGGC CTGCCGCTGGACGAAGCGCTGGCCGCGCTGGCCGACCAGGCCGAACGCCCCTATGTGCACGAGCTGCTGGCATCCATCCG CGCCGAGGTGGTGGGCGGCAGCTCGCTGTCGGTGGCGCTGGCCCAGCATCCGCGCGATTTTCCGGACATCTACCGCGCGC TGGTCTCGGCCGGCGAGCATTCGGGCAACCTGGGGCTGGTGCTGTCGCGCCTGGCCGACTACATCGAAAGCCGCAACGCG CTGACCTCCAAGATCAAGCTGGCCTTCACCTATCCGGCCATCGTCACGGTGGTGGCCTTCGCCATCGTGATCTTCCTGCT GTCGTACGTGGTGCCGCAGGTGGTGAGCGTGTTCGCCAACACCAAGCAGAAGCTGCCGACGCTGACCATCATCATGCTGT GGCTGTCGGATTTCGTGCGCAACTGGGGATGGCTGGCGGCGATCGTGCTGGCGGCGCTGGGGCTGCTGGTGCGCAAGCTG CTCCAGCAGCCGGCGCTGCGGCTGTCGTGGCATCGCTGGCTGCTGACCGCGCCGCTGTTCGGCAAGCTGGTCCGCGGCTA CAACACGGCGCGCTTTGCCAGTACGCTGGCCATCCTGAGCAGCGCCGGCGTGCCGATCCTGCGCGGCCTGCAGGCCGCCG GGGAAACGCTCAACAATGTCGCGCTCAAGACCAACGTCGAGGATGCGGCCACGCGTGTGCGGGAAGGCACGTCGCTGGCG CGGGCGCTGGCGGCGCAGAACCAGTTTCCGCCGGTGCTGGTGCACCTGATCCGCTCGGGCGAGGCGACCGGCAACCTGCC GGCCATGCTGGAACGCGCGGCGCAAGGCGAGGCGCAGGAGCTGGAGCGGCGCACGCTGTTCCTGACCGGGCTGCTCGAAC CCGCGCTGATCCTGACGATGGGGGTGGTGGTGCTGCTGATCGTGCTGGCGGTGCTGATGCCGATCATCGAGATCAATCAG CTGGTGCACTGA Protein sequence : MPAFRYEAADASGRTDRGVIEADSARQARTALRARGLTPLVVDALGAQAAKRAGSRFGKRLSPQENALVTRQLASLLVAG LPLDEALAALADQAERPYVHELLASIRAEVVGGSSLSVALAQHPRDFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNA LTSKIKLAFTYPAIVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWLSDFVRNWGWLAAIVLAALGLLVRKL LQQPALRLSWHRWLLTAPLFGKLVRGYNTARFASTLAILSSAGVPILRGLQAAGETLNNVALKTNVEDAATRVREGTSLA RALAAQNQFPPVLVHLIRSGEATGNLPAMLERAAQGEAQELERRTLFLTGLLEPALILTMGVVVLLIVLAVLMPIIEINQ LVH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 2e-46 | 41 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 9e-47 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspF | NP_521237.1 | general secretion pathway protein F | VFG0181 | Protein | 1e-65 | 48 |
