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Name : gspE (RSc3115) Accession : NP_521236.1 Strain : Ralstonia solanacearum GMI1000 Genome accession: NC_003295 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 3352592 - 3354193 bp Length : 1602 bp Strand : + Note : Product confidence : probable; Gene name confidence : probable; predicted by Codon_usage; predicted by Homology; predicted by FrameD DNA sequence : ATGGCGGCTGAGACGATCCACGCGGCCGGAAAGGCGGTGAACATCATGGCAACGCAAGCTTCTTCCACTGACGCGCGCAC GCTCGAGCCGCCGTCGCCCTCGGCGGTGCGGCTGGTGCCGTATGTGTTCGCGCGCGACGCCAGGCTGCTGGTGGCGCGGC AGGATGTCGACTCGCTCGAGGTGTGGGTCTGCCCCGAGACCTCGCGCGCCGCGCTGGCCGAGCTGGCCCGCGTGTTCGGC GCGCTGCGCCTGGTGAGCCTGGACGCCGCCGCGCTCTCCGCCGCCACGCAGACGGCCTACAACGCCCAGGACGGCAGCGC GGCCCAGGTGGTCGGCGAGGTCGAGGGCGAGGTGGACCTGTCGCGCCTGATGCAGGACATCCCGGCCGTGGAAGACCTGC TCGAATCGGAAGACGACGCGCCGATCATCCGCATGATCAACGCGCTGCTCACGCAGGCCGCACGCGAGGGCGCCTCGGAC ATCCACATCGAGCCGTTCGAGAACGCCTCGGTGGTGCGCTTCCGCGTGGACGGCACGCTGCGCGACGTGGTGCGCCCGAA GAAGGCGCTGCACGGCGCGCTGATCTCGCGCATCAAGATCATGGCGCAGCTCGACATCGCCGAGAAACGCCTGCCGCAGG ACGGCCGCATCACGCTGCGCGTGGGCGGGCGACCGGTGGACGTGCGTGTCTCCACCCTGCCGACCGGCCACGGCGAGCGC GCGGTGCTGCGCCTGCTCGACAAGGAAGCCGGCCGGCTTGACCTCGGCAAGCTCGGCATGGGCGCCGGCACGCTGGGGCG CTTCGACCGCCTGATCAACCAGCCGCACGGCATCGTGCTCGTCACCGGCCCGACCGGCTCGGGCAAGACCACCACGCTGT ATGCCGCGCTGTCGCGGCTCGATGCCAGCAGCACCAACATCATGACGGTGGAGGACCCGATCGAGTACGACCTGGACGGT ATCGGCCAGACCCAGGTCAACGCGAAGATCGACATGACCTTCGCCAAGGCCCTGCGCGCCATCCTGCGGCAGGACCCGGA CGTGGTGATGATCGGCGAGATCCGCGACCTGGAGACCGCGCAGATCGCGGTGCAGGCCTCGCTGACCGGCCACCTGGTGC TGGCGACGCTGCACACCAACGATTCGGCCTCGGCGGTCACGCGGCTGATCGACATGGGGATCGAGCCGTTCCTGCTGTCG TCGTCGCTGCTGGGCGTGCTGGCGCAGCGGCTGGTGCGGCGCCTGTGCGTGCACTGCCGCCGCGAGGAAGTGCTGGAGCT CACCCCCACCGAGATCGAGGCCGTGGCCGGCACGCCGCCCGCCGACGGCACCGCCGCCGCCGTGCCGACGCGCCGCTCGG TGTGGCACCACGTCGGCTGCGAGCACTGCGGCCAATCGGGCTACCAGGGCCGGACCGGCGTGTACGAGCTGCTGACGGTG ACGCCCGAGATCCAGACCATGATCCACCGCCAGGCGCCCGAGTCCGAGATCAAGGCGCTCGCCATCGGCCAGGGCATGCA TACCATGCGCGCGGATGCGCAGCGGTGGCTGGACGCGGGCGCGACGTCGCTGGAAGAGGTGCTGCGCGTGACGCGCGATT GA Protein sequence : MAAETIHAAGKAVNIMATQASSTDARTLEPPSPSAVRLVPYVFARDARLLVARQDVDSLEVWVCPETSRAALAELARVFG ALRLVSLDAAALSAATQTAYNAQDGSAAQVVGEVEGEVDLSRLMQDIPAVEDLLESEDDAPIIRMINALLTQAAREGASD IHIEPFENASVVRFRVDGTLRDVVRPKKALHGALISRIKIMAQLDIAEKRLPQDGRITLRVGGRPVDVRVSTLPTGHGER AVLRLLDKEAGRLDLGKLGMGAGTLGRFDRLINQPHGIVLVTGPTGSGKTTTLYAALSRLDASSTNIMTVEDPIEYDLDG IGQTQVNAKIDMTFAKALRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHLVLATLHTNDSASAVTRLIDMGIEPFLLS SSLLGVLAQRLVRRLCVHCRREEVLELTPTEIEAVAGTPPADGTAAAVPTRRSVWHHVGCEHCGQSGYQGRTGVYELLTV TPEIQTMIHRQAPESEIKALAIGQGMHTMRADAQRWLDAGATSLEEVLRVTRD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-101 | 57 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-101 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspE | NP_521236.1 | general secretion pathway protein E | VFG0182 | Protein | 2e-110 | 60 |
| gspE | NP_521236.1 | general secretion pathway protein E | VFG1876 | Protein | 2e-103 | 58 |
| gspE | NP_521236.1 | general secretion pathway protein E | VFG2048 | Protein | 3e-101 | 55 |
| gspE | NP_521236.1 | general secretion pathway protein E | VFG0233 | Protein | 1e-76 | 46 |
| gspE | NP_521236.1 | general secretion pathway protein E | VFG2426 | Protein | 8e-66 | 45 |
| gspE | NP_521236.1 | general secretion pathway protein E | VFG0112 | Protein | 3e-74 | 44 |
| gspE | NP_521236.1 | general secretion pathway protein E | VFG1880 | Protein | 3e-74 | 43 |
