Gene Information

Name : tISRso12b (RSc2706)
Accession : NP_520827.1
Strain : Ralstonia solanacearum GMI1000
Genome accession: NC_003295
Putative virulence/resistance : Unknown
Product : ISRSO12-transposase ORFB protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2910988 - 2911692 bp
Length : 705 bp
Strand : -
Note : predicted by Codon_usage; predicted by Homology; predicted by FrameD

DNA sequence :
ATGCACGAGATCGCCAGCACCCGGGTACGGTACGGCTTCTGGCGCATTTACGTGCTGATTCGTCGCGAGGGTTGGTTGGT
CAATCACAAACGCGTCTACCGCCTGTACAAGGAGGAAGGCTTGAATCTGCGCACCAAAAGACCCAGGCGCCGCAAGGCGG
CCGCACATAGACTCGAGCGCCCGGTGCTCACCGCACCGAATCAGAGCTGGAGCATGGATTTCGTATCCGACGCCTTGTTT
AACGGCAACAAGTTCCGCGCACTGACTGTGGTGGACAACCATACGCGGGAATGCCTGGCGATTGAGGCTGCCCCGTCGCT
AAACGGCAGTGACGTTGTGCGTGTGTTGCAAGCCATCGTGATCCGACGAGGCATGGTGCCCGCACGCATCCAGGCTGACA
ACGGGCCGGAATTTGTGTCGCTGGCGCTGGACAAGTGGGCGTATGAGGCAGGCGTAACGCTCGACTTCTCTCGGCCTGGC
AAGCCTACCGACAATGCCTTCATCGAGTCCTTCAACGGCAGCTTGCGCGATGAATGCCTGAACACGTACTGGTTCCTGTC
CCTTGAAGACGCACGCCAAAAGCTCGAAAACTGGAGGCACGATTACAATCATTTCCGGCCACATTCGGCGCTGGATGACA
CCGCACCAGCGCTCTTTGCACGGCAGTTTGCCATTACACCAACCACGCCGGCTTCTCTAGCCTGA

Protein sequence :
MHEIASTRVRYGFWRIYVLIRREGWLVNHKRVYRLYKEEGLNLRTKRPRRRKAAAHRLERPVLTAPNQSWSMDFVSDALF
NGNKFRALTVVDNHTRECLAIEAAPSLNGSDVVRVLQAIVIRRGMVPARIQADNGPEFVSLALDKWAYEAGVTLDFSRPG
KPTDNAFIESFNGSLRDECLNTYWFLSLEDARQKLENWRHDYNHFRPHSALDDTAPALFARQFAITPTTPASLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13352.1 insertion sequence IS407 OrfB Not tested PAGI-5 Protein 4e-38 51
unnamed ABR13540.1 insertion sequence IS407 OrfB Not tested PAGI-8 Protein 5e-44 50
trp1400B CAB46580.1 IS1400 transposase B Not tested HPI Protein 3e-34 46
EXB25 ABD94712.1 hypothetical protein Not tested ExoU island B Protein 1e-26 45