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Name : tISRso6a (RSc2333) Accession : NP_520454.1 Strain : Ralstonia solanacearum GMI1000 Genome accession: NC_003295 Putative virulence/resistance : Unknown Product : ISRSO6-transposase ORFA protein Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4584 EC number : - Position : 2531677 - 2532720 bp Length : 1044 bp Strand : + Note : predicted by Codon_usage; predicted by Homology; predicted by FrameD DNA sequence : ATGGAAGTACAGATTCTGCGTCGCCAGGGCTGCAGTTTGCGTGCGATCGCAACCGAGACTGGCATGGCCGTGAACACCAT CAGGAAGTACCTGGTGTCCGGCGCGCCCGAGCGCAAGCCACGCGAGCCGGTGGTGGGCAAGTTGGAGCCGTTCAAGGCCT TCATACAGTCCCGCGTTGACGCCGCACGTCCGGACTGGATTCCGGCGACGGTGCTGTTGCGCGAGATCGAGGAGCGTGGG TACACCGGCAAGCTGCGCATTGTTCAGGAATACCTGCAAACGCTGCGGCCCGCCAGCCGGCCCGATCCGGTTGTGCGGTT CGAGACGGAACCCGGCCAGCAAATGCAGATGGATTGGATCGAATTCCGCAAGACCGGGCACAAGCACGGCATGCTGGCGG CATTCGTTGCCACGTTGGGATACAGCCGAGCCAGCTATGTCGAGTTCGTTTCCGACATGCGCCTGGAGACCTTGCTCACC TGCCATGTGCGTGCATTCGATGCCTTTGGCGGAGTCACCAAGGAGATCCTGTACGACAACATGAAGACGGTGATCCTGCA GCGCAATGCCTACGGTAAGCAACAGCATCGGTACCAACCAGGCTTTGCCGACTTCGCCAAGCACTATGGGTTCGCGCCGC GCGTGTGCAAGCCCTACCGGGCGAAGACGAAGGGCAAAGTCGAGCGGATGAACGGCTACCTGCGCTACAGCTTCTGGGTC CCGTTGGCTTCCAAGCTCAAGCAGATCGGCTTGGCTGCGGACAAGGATCTGTGCAATCAACAGGTTGGCCTCTGGCTGCG GGATGTGGCCAATGTCCGCGTTCACGGCACGACGAAGCGCGTTCCCGTGGACGTCCTGAGAGAGGAACGACCGCATCTGC TGCCAACGCCGGCACTCTATGCCGGGCGATCGGTGCGCGCCGGTGCAACGCCTCACGAGACGCCCAAGCCGGCCTCCAGG TTTGCGACGCCGGACTGGCATGTCTGCTTGCAGCACCCGCTGTCCGTCTACGATTCCTTCTGCCAGCAGGGAGTCGCCGC ATGA Protein sequence : MEVQILRRQGCSLRAIATETGMAVNTIRKYLVSGAPERKPREPVVGKLEPFKAFIQSRVDAARPDWIPATVLLREIEERG YTGKLRIVQEYLQTLRPASRPDPVVRFETEPGQQMQMDWIEFRKTGHKHGMLAAFVATLGYSRASYVEFVSDMRLETLLT CHVRAFDAFGGVTKEILYDNMKTVILQRNAYGKQQHRYQPGFADFAKHYGFAPRVCKPYRAKTKGKVERMNGYLRYSFWV PLASKLKQIGLAADKDLCNQQVGLWLRDVANVRVHGTTKRVPVDVLREERPHLLPTPALYAGRSVRAGATPHETPKPASR FATPDWHVCLQHPLSVYDSFCQQGVAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api83 | CAF28557.1 | transposase | Not tested | YAPI | Protein | 3e-67 | 45 |
| s0035 | CAD33773.1 | ORF A protein | Not tested | PAI I 536 | Protein | 1e-67 | 45 |
| y1094 | CAD42088.1 | OrfA protein of IS100 transposase | Not tested | PAI II 536 | Protein | 1e-67 | 45 |
| y1093 | YP_002346890.1 | transposase for insertion sequence IS100 | Not tested | HPI | Protein | 4e-67 | 45 |
| orfA | CAE85182.1 | OrfA protein, transposase, IS100 | Not tested | PAI V 536 | Protein | 1e-67 | 45 |
| y2411 | NP_669718.1 | transposase | Not tested | HPI | Protein | 4e-67 | 45 |
| y1094 | CAC43410.1 | IS100 transposase; transposase ORFA | Not tested | PAI III 536 | Protein | 1e-67 | 45 |
| YPTB1585 | YP_070113.1 | transposase | Not tested | HPI | Protein | 4e-67 | 45 |
| unnamed | CAA21403.1 | - | Not tested | HPI | Protein | 4e-67 | 45 |
| y1093 | CAD33720.1 | ORF A protein | Not tested | PAI I 536 | Protein | 3e-67 | 45 |
| unnamed | CAB46599.1 | IS100 transposase | Not tested | HPI | Protein | 3e-67 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| tISRso6a | NP_520454.1 | ISRSO6-transposase ORFA protein | VFG1626 | Protein | 7e-68 | 45 |
| tISRso6a | NP_520454.1 | ISRSO6-transposase ORFA protein | VFG1607 | Protein | 7e-68 | 45 |
| tISRso6a | NP_520454.1 | ISRSO6-transposase ORFA protein | VFG1461 | Protein | 2e-67 | 45 |
| tISRso6a | NP_520454.1 | ISRSO6-transposase ORFA protein | VFG1514 | Protein | 7e-68 | 45 |
