Gene Information

Name : tISRso8b (RSc2267)
Accession : NP_520388.1
Strain : Ralstonia solanacearum GMI1000
Genome accession: NC_003295
Putative virulence/resistance : Unknown
Product : ISRSO8-transposase orfB protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2458072 - 2458962 bp
Length : 891 bp
Strand : -
Note : predicted by Codon_usage; predicted by Homology; predicted by FrameD

DNA sequence :
GTGAAGTACGCCTGGATTGACCAGCAGTGTCGGCACTATCCGCTGTCGGCGCTGTGCGGGGTCCTCTCGGTCAGCGTCAA
CGGCTATCGTGCCTGGAGGCGAGGCGGCACGCCCGAGCGCAAGCGGCTCACCGACACGCAATTGCTCACATTGATTCGGG
CCATCCATGCGCAGTTCAAGGGCGCCTATGGCTCGCCGCGCATGACCGAAGAGATTCGCGCACGCGGGTTCCCGGCCAGC
AAAGCGCGCGTGGAACGCCTGATGAGCCAGAACGGCATCCGGGCACGCCACAAGCGCCGTTATCGGGTCACGACCGATTC
CAGGCACAAGCTGCCGGTCGCGCCGAACCTGCTGAACCGCGAGTTCACGCCGGCCGAGCCGAATCAGGTGTTCAGTTCGG
ACATCACATACATCTGGACCGACGAGGGCTGGCTGTATCTGGCCGTGGTGCTGGACCTGTTCAATCGGGAAGTCATGGGT
TGGTCCATCAAGCCGCGCATGACGGCAGACCTGGTGACCGACGCACTGACGATGGCGTGGTTCCGCCGCAAGCCCGCGCC
CGGCGCGCTGCATCATTCGGACCGTGGCAGCCAGTACGCGAGCCACGAATTCCAGCGCAAGCTGGCCGAATACGGCATGC
GCTGTTCGATGAGCCGCAAGGGAAATTGTTGGGACAACGCACCGACTGAGAGCTTCTTCAACAGCCTGAAGAACGAACGG
GTGCATGCCACGCGCTACCGGACGCATCAGGAGGCTGCGGCGGACCTGTTCGAATACATCGAAGTGTTTTATAACCGCAG
TCGCCGTCATTCGTCGCTCGGCTTTGTCTCGCCAGCTCAGTTCATGCAGGACTGGCTCAAGGCTCAACAGGTGAAGGAAA
CGGCTGCATAA

Protein sequence :
MKYAWIDQQCRHYPLSALCGVLSVSVNGYRAWRRGGTPERKRLTDTQLLTLIRAIHAQFKGAYGSPRMTEEIRARGFPAS
KARVERLMSQNGIRARHKRRYRVTTDSRHKLPVAPNLLNREFTPAEPNQVFSSDITYIWTDEGWLYLAVVLDLFNREVMG
WSIKPRMTADLVTDALTMAWFRRKPAPGALHHSDRGSQYASHEFQRKLAEYGMRCSMSRKGNCWDNAPTESFFNSLKNER
VHATRYRTHQEAAADLFEYIEVFYNRSRRHSSLGFVSPAQFMQDWLKAQQVKETAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 9e-55 48
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 9e-55 48
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 9e-55 48
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 6e-55 45
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 6e-55 45
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 2e-54 45
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 2e-54 45
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 3e-50 44
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 1e-49 44
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 3e-50 44
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 1e-52 44
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 2e-54 44
unnamed AAF09030.1 unknown Not tested SHI-O Protein 2e-54 44
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 2e-54 44
unnamed AAF09022.1 unknown Not tested SHI-O Protein 1e-54 44
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 5e-47 43
tnpB CAB61574.1 transposase B Not tested HPI Protein 2e-41 42
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 1e-41 42
RS04 AAP82949.1 putative transposase Not tested PAPI-2 Protein 1e-32 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tISRso8b NP_520388.1 ISRSO8-transposase orfB protein VFG1706 Protein 9e-55 45
tISRso8b NP_520388.1 ISRSO8-transposase orfB protein VFG1631 Protein 3e-47 43