Gene Information

Name : RSc1871 (RSc1871)
Accession : NP_519992.1
Strain : Ralstonia solanacearum GMI1000
Genome accession: NC_003295
Putative virulence/resistance : Unknown
Product : integrase prophage protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 2054819 - 2056036 bp
Length : 1218 bp
Strand : -
Note : -

DNA sequence :
ATGGCACTCACCGACACCGCAATCCGCAACGCTAAGCCTGCCGACAAGCCGATCAAGCTGTTCGACGGTGGCGGCTTGTT
TCTCCACGTCACGCCCGCTGGCCAGCGCTACTGGCGGCTGAAGTATCGGTTCGCGGGCAAGGAGAAGCTGCTGGCCATTG
GCGTCTACCCGGAAATTGGCCTGAAAGAGGCGAGGGACCGGCGTGAGGAAGCCAAACGGCTGCTGGGCGAGGGTGTTGAC
CCGTCAGTCGAGCGCAAGGTGCGGAAGGTGGCGACGGTCGAGCGGGCGGCGAACAGCTTCGAGGCCGTGGCCCGCGAGTG
GCACGCCAAGTACGCGCCGGGCTGGTCCGAGAGCAATGCCAAGAAGGTGCTGGCTCGCCTGGAGAACGACGTGTTCCCCT
GGCTTGGTGGCCGGCCGATCGCCGAAGTGAAGGCGCCCGAGCTGCTGGGCGTGGCCCGCCGCGTCGAGTCTCGCGGCGCC
CTGGATACTGCGCACCGCGTGCTGCAAACCTGCGGCCAGATCTTCCGCTACGCCGTTGCCACCGGCCGGGCAGAGCGTGA
TCCCTCGGGCGACCTGCGGGGCGCCTTGCCGCCGGCCAAGGGGAAGCACTACGCCGCGCCGACTGATCCCAAGGAGGTGG
CAGGGCTGCTGCGCATGTTCGACGGTTTTACCGGCACATTCATCGTGAAATGCGCGCTGCTGCTGGCGCCGATGGTCTTC
GTTCGGCCTGGCGAGTTGCGCGCGGCGGAATGGGCGGACATCGATCTGGATGCGGCCGAATGGCGCTTCGTGTCTTCCAA
GCGGGATGTGGCTCACATCGTGCCGCTCTCCACCCAGGCCGTCGCAATCCTGCGTGACCTGCACGCGCTGACCGGCCACG
GACGTTACCTCTTCCCCGGTGCGCGGGACAAAGCCAAACCCATGTCCGAGGCGGCCATCAATGCTGCGCTCAAGCGCATG
GGCATCGACACGCAGAAGGAGTTCACCGGCCATGGCGTGCGCCCGATTGCCCGCACTATCTTGCGCGAGGTGCTGGGCTT
CGAGGCGGAGGTGATCGAGTTGCAGCTTGCGCACCGGAAGAAAGACCCCAACGGCGCGGCGTATGACCGGGTGGCGTTCC
TGGCCGTGCGCAAGCAGATGATGCAGGCTTGGGCGGACTACCTGGACGAATTGAAGGCCGGGGCCAAGGTGCTGCCGCTC
AAGGGTTCCGCGGCGTAG

Protein sequence :
MALTDTAIRNAKPADKPIKLFDGGGLFLHVTPAGQRYWRLKYRFAGKEKLLAIGVYPEIGLKEARDRREEAKRLLGEGVD
PSVERKVRKVATVERAANSFEAVAREWHAKYAPGWSESNAKKVLARLENDVFPWLGGRPIAEVKAPELLGVARRVESRGA
LDTAHRVLQTCGQIFRYAVATGRAERDPSGDLRGALPPAKGKHYAAPTDPKEVAGLLRMFDGFTGTFIVKCALLLAPMVF
VRPGELRAAEWADIDLDAAEWRFVSSKRDVAHIVPLSTQAVAILRDLHALTGHGRYLFPGARDKAKPMSEAAINAALKRM
GIDTQKEFTGHGVRPIARTILREVLGFEAEVIELQLAHRKKDPNGAAYDRVAFLAVRKQMMQAWADYLDELKAGAKVLPL
KGSAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec33 AAW51716.1 Int Not tested AGI-3 Protein 7e-72 44
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-68 44
int AAD44730.1 Int Not tested SHI-2 Protein 4e-71 44
int CAC39282.1 integrase Not tested LPA Protein 9e-72 44
int AAC31482.1 CP4-like integrase Not tested LEE Protein 3e-71 44
int ACU09430.1 integrase Not tested LEE Protein 3e-71 44
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 3e-71 44
ECs4534 NP_312561.1 integrase Not tested LEE Protein 3e-71 44
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 4e-73 44
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-67 44
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-67 44
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 1e-69 43
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-69 43
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-69 43
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 5e-66 43
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 5e-66 42
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 5e-66 42
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-65 42
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 5e-65 42
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 3e-65 42
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-66 42
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 9e-65 42
int AAL51028.1 CP4-like integrase Not tested LEE Protein 9e-65 42
int-phe AAL60261.1 Int-phe Not tested LEE Protein 9e-65 42
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 1e-64 42
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 7e-65 42
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 1e-64 42
int AAL51003.1 CP4-like integrase Not tested LEE Protein 3e-65 42
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 4e-66 42
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-66 42
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 3e-65 42
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 9e-65 41
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 5e-64 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSc1871 NP_519992.1 integrase prophage protein VFG0783 Protein 1e-71 44
RSc1871 NP_519992.1 integrase prophage protein VFG0598 Protein 7e-70 43
RSc1871 NP_519992.1 integrase prophage protein VFG0626 Protein 2e-66 42
RSc1871 NP_519992.1 integrase prophage protein VFG1693 Protein 1e-65 42