|
Name : tISRso18 (RSc1704) Accession : NP_519825.1 Strain : Ralstonia solanacearum GMI1000 Genome accession: NC_003295 Putative virulence/resistance : Unknown Product : ISRSO18-transposase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3039 EC number : - Position : 1820273 - 1821238 bp Length : 966 bp Strand : - Note : predicted by Codon_usage; predicted by Homology; predicted by FrameD DNA sequence : ATGAAACAAACCGACCTTGGCCTGGACCTGAGCAACCGGCGCACGCGCAAGCAGGTATTTCTCGACGAGATGGAGCGCGT GGTGCCATGGCAGGCGTTTTTGGCGCTGATAGCACCGCATGCGCCGACCAAGGCGACCGGCCGCAAGCCGTTTCCAATCG AGGCGATGCTGCGCATCCACTTGTTGCAGCAATGGTTCGGGCTGTCGGACGTGGCGATGGAAGAGGCGCTGTACGACGTG CCGTTGTATCGTCAATTCGCGGGTCTGGGTGGCATGAGCCGGCTGCCGGACCGGGTCAGCATTCTGCGCTTCCGGCACTT GCTGGAGCGGCACAAGCTGGCCGAGCAGTTTCTGCAGACCGTCAACGAGCAACTCAGTGCCAAGGGGTACCTGCTCAAAG AGGGCACGGCGGTCGATGCCACGCTGATTTCCGCGCCCAGCTCGACGAAGAACCAAAGCGGCGAGCGCGACCCTGAGATG CACCAGACCAAGAAAGGCAACCAGTGGCATTTCGGCATGAAGGCGCACATCGGTGTGGATGCAGACTCGGGGCTGGTGCA TACCGTGGTGGGCACGGCGGCCAACGTCAACGATGTTACGCAAGCGCATGCTCTGGTGCATGGCAAGGAGGCCGATGTGT TCGGCGATGCCGGCTACCAGGGCATCGACAAGCGCGAGGAAGTGCAGAAGCTGAAGGTGCGTTGGCATGTGGCATTGCGC CCGGGCAAGCGCCGCGCCTTGGACAAGAACACCGCGCTGGGCAAGCTCGTTGATGAACTGGAACGGGTCAAGGCGCGCAT CCGTGCCCGCGCGGAACATCCGTTTCGTGTCATCAAGCGCCAGTTCGGGCATCTGAAGGTTCGCTATCGCGGCTTGATGA AGAACACGCAACAGTTGCACACGCTGTTCGCCCTGAGCAACCTGTGGATGATGCGCGGGCGACTGATGGGTGAGGCCCGC GCATGA Protein sequence : MKQTDLGLDLSNRRTRKQVFLDEMERVVPWQAFLALIAPHAPTKATGRKPFPIEAMLRIHLLQQWFGLSDVAMEEALYDV PLYRQFAGLGGMSRLPDRVSILRFRHLLERHKLAEQFLQTVNEQLSAKGYLLKEGTAVDATLISAPSSTKNQSGERDPEM HQTKKGNQWHFGMKAHIGVDADSGLVHTVVGTAANVNDVTQAHALVHGKEADVFGDAGYQGIDKREEVQKLKVRWHVALR PGKRRALDKNTALGKLVDELERVKARIRARAEHPFRVIKRQFGHLKVRYRGLMKNTQQLHTLFALSNLWMMRGRLMGEAR A |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tnp-33 | AAN62255.1 | transposase | Not tested | PAGI-3(SG) | Protein | 3e-87 | 60 |
| tnpA | AAF71487.1 | TnpA | Not tested | Hrp PAI | Protein | 1e-72 | 59 |
| PSPTO_1407 | YP_003355052.1 | ISPssy transposase or derivative | Not tested | Hrp PAI | Protein | 2e-72 | 59 |
| unnamed | AAO33449.1 | putative transposase | Not tested | Not named | Protein | 3e-62 | 55 |
| tnpA | ACF06175.1 | putative transposase | Not tested | Tn5036-like | Protein | 5e-66 | 51 |
| tnpA | ACF06178.1 | putative transposase | Not tested | Tn5036-like | Protein | 5e-66 | 51 |
