Gene Information

Name : tRso10b (RSc1435)
Accession : NP_519556.1
Strain : Ralstonia solanacearum GMI1000
Genome accession: NC_003295
Putative virulence/resistance : Unknown
Product : ISRSO10-transposase ORFB protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1539489 - 1540091 bp
Length : 603 bp
Strand : +
Note : predicted by Homology

DNA sequence :
ATGCGTGTGCACAGCTTGCTGCTTGAGCGCAGGCCGACGCCACCGCGTCCACCGCGCCGGCATGACGGCAAGGTCGCCGT
GGCCAAGAGCAACCAGCGCTGGTGCTCCGATGGCTTCGAGTTCCGCTGCGACAACGGCGAGCCGCTGCGGGTGACGTTCG
CGCTGGATTGCTGCGACCGCGAGGCGATGAGCTGGGTGGCGACGACCGGCGGCTACAGCGGCGACGTAGTACGCGACGTG
ATGCTGGCGGCCGTCGAGCAGCGCTTCGGCAATGTTCCGAAAGCGCCAGCGGAAATTGAATGGCTGACGGACAACGGCTC
AGGCTACATTGCTGGGAAGACTCGCGAGTTCGCCACGGACATTGGCTTGAAGCCATTGACGACACCGGTTTGCAGCCCGC
AGAGCAACGGCATGGCCGAGAGCTTCGTGAAGACGATGAAGCGCGACTACGTCGCCTTCATGCCCAAGCCTGACGCGGCC
ACAGCGACGCGCAACCTCGCCATCGCGTTCGAGCATTACAACGAGCAGCATCCCCATAGCGCACTGAAATATCGCTCGCC
ACGCGAGTTCAGGCGCAGGACGGAATCATCAACTCAAGTGTGA

Protein sequence :
MRVHSLLLERRPTPPRPPRRHDGKVAVAKSNQRWCSDGFEFRCDNGEPLRVTFALDCCDREAMSWVATTGGYSGDVVRDV
MLAAVEQRFGNVPKAPAEIEWLTDNGSGYIAGKTREFATDIGLKPLTTPVCSPQSNGMAESFVKTMKRDYVAFMPKPDAA
TATRNLAIAFEHYNEQHPHSALKYRSPREFRRRTESSTQV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SF2985 NP_708759.1 insertion element IS2 transposase InsD Not tested SHI-1 Protein 2e-55 68
unnamed AAL67379.1 transposase-like protein Not tested PAI II CFT073 Protein 2e-56 68
tnpF AAD44739.1 TnpF Not tested SHI-2 Protein 1e-55 68
unnamed CAC39284.1 hypothetical protein Not tested LPA Protein 4e-57 67
ECO111_3773 YP_003236109.1 putative IS2 transposase InsAB Not tested LEE Protein 9e-57 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tRso10b NP_519556.1 ISRSO10-transposase ORFB protein VFG0649 Protein 5e-56 68