Gene Information

Name : dnaB (RSc1311)
Accession : NP_519432.1
Strain : Ralstonia solanacearum GMI1000
Genome accession: NC_003295
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : 3.6.1.-
Position : 1395765 - 1397186 bp
Length : 1422 bp
Strand : +
Note : unwinds double stranded DNA

DNA sequence :
ATGAATGCGCCTCGCCGCTATAATCCCGCCATGAACGCGCCCACCGATCCCCAGCTCGAATCCCTCAAGGTTCCGCCGCA
TTCCATCGAGGCCGAACAGTCGGTGCTCGGCGGCCTGCTGTTGGACAACGCCGCGTGGGACCGCATCGCCGACTTCATCA
ACGAGCACGATTTCTATCGCTACGACCACCGGCTGATCTTCCACAACATCGGCAAGCTGATTTCGCAGGCCAAGCCGGCC
GACGTGATCACGGTGTACGAGCAGCTGCAGGCAGCGGGCAAGGCGGAAGAGGTGGGTGGCCTGGCCTACCTGAACGCATT
GGCGCAGAACACGCCGAGCGCGGCCAACATCCGCCGCTATGCCGAGATCGTCCGTGATCGTGGTGTGCTGCGCCAGTTGG
TGACGATTGCCGACGAGATCTCTGCGGGCGCTTTCAACCCGCAGGGTCGAGACGTGCGCCAGTTGCTGGACGAAGCTGAA
TCCAAGGTGTTCGCGATTGCCGAAGAGGGCGCGCGCGGGCAGAAGGGCTTCCTGGAGATCCAGCCGCTGCTGACGCAGGT
GGTCGAGCGCATCGACGAGCTGTACCACCGTGATAATCAGAGCGATATCACCGGTGTGCCGACGGGTTTCGTTGACCTGG
ACCGCATGACCAGCGGTATGCAGGGCGGTGACCTGATCATCGTGGCCGGTCGCCCGTCGATGGGTAAGACGGCTTTCTCG
CTGAATATCGGTGAGCACGTGGCCGTGGAGCAGGGCTTGCCGGTGGCGGTGTTCTCGATGGAAATGGCGGGCACGCAGCT
CGCCATGCGGATGCTCGGTTCGGTCGGCCGGCTGGACCAGCACCGCCTGCGCACGGGCCGCCTGCTCGACGAGGACTGGC
CGCGCCTGACGCATGCCATCCAGAAGATGAACGACGCGCAGCTGTTCATCGACGAAACGCCGGCGCTGAACCCGATGGAG
CTGCGCGCGCGTTCGCGCCGGCTGGCCCGGCAGTGCGGGCAGCTTGGCCTGATCATCATCGATTATCTGCAGCTGATGTC
GGGCTCGGGTGGCGGCGGCGAGAACCGCGCGACCGAGATCTCGGAAATCTCCCGTTCGCTCAAGGGGCTGGCCAAGGAGC
TCAACTGTCCGGTGATCGCGCTGTCGCAGCTGAACCGGAGCCTGGAGCAGCGTCCGAACAAGCGTCCCGTGATGTCGGAC
TTGCGCGAATCCGGCGCCATCGAACAGGATGCCGACGTGATCCTGTTTATCTACCGCGACCAGGTCTACAATCCTGATTC
CCCGGACAAGGGTACCGCCGAAATCATTATCGGCAAGCAGCGTAACGGTCCGATTGGTACCGTTCGGCTGACGTTCCTGG
GTGAATACACGAAGTTCGACAACTTCACCGGCGGCAACGCCTTCTTCGATAACGACACCTGA

Protein sequence :
MNAPRRYNPAMNAPTDPQLESLKVPPHSIEAEQSVLGGLLLDNAAWDRIADFINEHDFYRYDHRLIFHNIGKLISQAKPA
DVITVYEQLQAAGKAEEVGGLAYLNALAQNTPSAANIRRYAEIVRDRGVLRQLVTIADEISAGAFNPQGRDVRQLLDEAE
SKVFAIAEEGARGQKGFLEIQPLLTQVVERIDELYHRDNQSDITGVPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKTAFS
LNIGEHVAVEQGLPVAVFSMEMAGTQLAMRMLGSVGRLDQHRLRTGRLLDEDWPRLTHAIQKMNDAQLFIDETPALNPME
LRARSRRLARQCGQLGLIIIDYLQLMSGSGGGGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSD
LRESGAIEQDADVILFIYRDQVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTFLGEYTKFDNFTGGNAFFDNDT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 8e-109 54
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 8e-94 50
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 9e-94 50
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 3e-89 48
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 6e-91 47
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 8e-89 47
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 8e-89 47
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 6e-92 46
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 5e-74 45