|
Name : RSc1176 (RSc1176) Accession : NP_519297.1 Strain : Ralstonia solanacearum GMI1000 Genome accession: NC_003295 Putative virulence/resistance : Unknown Product : ABC transporter ATP-binding protein Function : - COG functional category : R : General function prediction only COG ID : COG4172 EC number : - Position : 1236244 - 1237899 bp Length : 1656 bp Strand : + Note : - DNA sequence : ATGACCCGCGTCGACCTGCGCTCGGCTAAGCCCGACTACGATGGCCCGCTGCTGCGGCTGGACGACCTGTCCGTGCGCTT CGAGGCCGAGCACAACGAGTGGATCGAGGCCGTCAGGCACGTCTCGTTCGACCTGCACGCCGGCGAGCGCTTTGCGCTGG TGGGCGAGTCGGGCTCCGGCAAGACGGTCACGGCGCTGTCGATCATGCGCCTGCTGGCCGACGCGCATTACAGCGGCCGC ATCCTGTTCGAGGGGCGCGACCTGCTGGCCGCGAGCGAGCGCCAGATGCGCGGCCTGCGCGGCGCCGACGTCGCGATGGT GTTCCAGGAGCCGATGACGGCGCTCAACCCGCTGTACACCATCGGCAACCAGATCGTCGAGACGCTGGAGCTGCACGAAG GCCTGGACAAGCGCGCCGCCAAGGCCCGCGCGATCGCGCTGCTGGAGCACACCGGCATCGCCGAGGCACCGCGCCGCTTC GATGCTTTCCCGCACCAGCTGTCCGGCGGCCAGCGGCAGCGTGCCATGATCGCCATGGCGCTCGCCTGCAGCCCCAAGCT GCTGGTCGCCGACGAGCCCACCACCGCGCTGGACGTGACCGTGCGCATGCAGATCCTGCAGCTGCTGCGCGACCTGCAGG CCGAATACGGCATGGCCGTGATGCTGATCACGCACGACCTGAACATGGTGCGCGCCTTTGCTGAGCGCGTGGGCGTGATG GAGCGGGGCGTGCTGGTGGAAACCGGCGAGACGGCGACCGTCTTCAGCGCGCCGCAGCATCCCTACACAGTGCGCCTGCT GGAAAGCCGCCCGCAGCGCGATGTGCTGCCGCTGGTGCCGCTCGCTCCCGTGCTGCTGGAGGCCGACCAACTGACGGTCA CCTACGATCGCCATCGCCCCGGGTTTGCCGGCTGGTTCCGCGCCGATCCGTTCACCGCCGTCGACCAGGTCTCGCTGCAG TTGCGCGAGGGCGAGACCCTGGGCATCGTCGGCGAGTCCGGTTCGGGCAAGACGACGCTGGCGCAGACGCTGCTCGGGCT GCAGCGTCCGAAGGCGGGCGATCTGCGCTTCCTCGGCAGTTCGCTGCTGGGCCAAACGCGCGACGAGCGCCGCGCGGTGC GTGCCCGCATGCAGGTGGTGTTTCAGGACCCGTTCGGTTCGCTCTCGCCGCGCATGACCATCGAGCAGATCGTCGGCGAG GGGTTGGCGCTGCATCAGCCGCACGTCAACGACGCCGAGCGCCGCCAGCGCGTGATCGAGGCGCTGCGCGAGGTCGGCCT GGACCGCACCGCCCTGGGACGCTATCCGCATGAGTTCTCCGGCGGGCAGCGCCAGCGCATCGCCATTGCGCGGGTGCTGA TCCTCAAGCCCCAGGTCCTGGTGCTGGATGAGCCGACTTCGGCACTCGACGTGTCGATCCAGCAGCAGGTGCTGTCGTTG CTGTCCGCCCTTCAGAAAAAGTACAACCTGTCGTACCTGTTCATCAGCCACGACCTCGCCGTGATCCGTGCCATGTCGCA CCGGGTGATGGTGATGAAGGACGGGAAGGTGGTGGAGGCGGGCGACACGGAAGCCGTGCTGGAGTCACCGTCCCACCCCT ACACCTGCAAGCTGATGGCGGCTGCGGCGCTCAAGCCGCTTCAGCCGCCGGGCTGA Protein sequence : MTRVDLRSAKPDYDGPLLRLDDLSVRFEAEHNEWIEAVRHVSFDLHAGERFALVGESGSGKTVTALSIMRLLADAHYSGR ILFEGRDLLAASERQMRGLRGADVAMVFQEPMTALNPLYTIGNQIVETLELHEGLDKRAAKARAIALLEHTGIAEAPRRF DAFPHQLSGGQRQRAMIAMALACSPKLLVADEPTTALDVTVRMQILQLLRDLQAEYGMAVMLITHDLNMVRAFAERVGVM ERGVLVETGETATVFSAPQHPYTVRLLESRPQRDVLPLVPLAPVLLEADQLTVTYDRHRPGFAGWFRADPFTAVDQVSLQ LREGETLGIVGESGSGKTTLAQTLLGLQRPKAGDLRFLGSSLLGQTRDERRAVRARMQVVFQDPFGSLSPRMTIEQIVGE GLALHQPHVNDAERRQRVIEALREVGLDRTALGRYPHEFSGGQRQRIAIARVLILKPQVLVLDEPTSALDVSIQQQVLSL LSALQKKYNLSYLFISHDLAVIRAMSHRVMVMKDGKVVEAGDTEAVLESPSHPYTCKLMAAAALKPLQPPG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 4e-73 | 44 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 4e-73 | 44 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 4e-73 | 44 |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 4e-73 | 44 |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 2e-87 | 43 |
