Gene Information

Name : RSc1176 (RSc1176)
Accession : NP_519297.1
Strain : Ralstonia solanacearum GMI1000
Genome accession: NC_003295
Putative virulence/resistance : Unknown
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG4172
EC number : -
Position : 1236244 - 1237899 bp
Length : 1656 bp
Strand : +
Note : -

DNA sequence :
ATGACCCGCGTCGACCTGCGCTCGGCTAAGCCCGACTACGATGGCCCGCTGCTGCGGCTGGACGACCTGTCCGTGCGCTT
CGAGGCCGAGCACAACGAGTGGATCGAGGCCGTCAGGCACGTCTCGTTCGACCTGCACGCCGGCGAGCGCTTTGCGCTGG
TGGGCGAGTCGGGCTCCGGCAAGACGGTCACGGCGCTGTCGATCATGCGCCTGCTGGCCGACGCGCATTACAGCGGCCGC
ATCCTGTTCGAGGGGCGCGACCTGCTGGCCGCGAGCGAGCGCCAGATGCGCGGCCTGCGCGGCGCCGACGTCGCGATGGT
GTTCCAGGAGCCGATGACGGCGCTCAACCCGCTGTACACCATCGGCAACCAGATCGTCGAGACGCTGGAGCTGCACGAAG
GCCTGGACAAGCGCGCCGCCAAGGCCCGCGCGATCGCGCTGCTGGAGCACACCGGCATCGCCGAGGCACCGCGCCGCTTC
GATGCTTTCCCGCACCAGCTGTCCGGCGGCCAGCGGCAGCGTGCCATGATCGCCATGGCGCTCGCCTGCAGCCCCAAGCT
GCTGGTCGCCGACGAGCCCACCACCGCGCTGGACGTGACCGTGCGCATGCAGATCCTGCAGCTGCTGCGCGACCTGCAGG
CCGAATACGGCATGGCCGTGATGCTGATCACGCACGACCTGAACATGGTGCGCGCCTTTGCTGAGCGCGTGGGCGTGATG
GAGCGGGGCGTGCTGGTGGAAACCGGCGAGACGGCGACCGTCTTCAGCGCGCCGCAGCATCCCTACACAGTGCGCCTGCT
GGAAAGCCGCCCGCAGCGCGATGTGCTGCCGCTGGTGCCGCTCGCTCCCGTGCTGCTGGAGGCCGACCAACTGACGGTCA
CCTACGATCGCCATCGCCCCGGGTTTGCCGGCTGGTTCCGCGCCGATCCGTTCACCGCCGTCGACCAGGTCTCGCTGCAG
TTGCGCGAGGGCGAGACCCTGGGCATCGTCGGCGAGTCCGGTTCGGGCAAGACGACGCTGGCGCAGACGCTGCTCGGGCT
GCAGCGTCCGAAGGCGGGCGATCTGCGCTTCCTCGGCAGTTCGCTGCTGGGCCAAACGCGCGACGAGCGCCGCGCGGTGC
GTGCCCGCATGCAGGTGGTGTTTCAGGACCCGTTCGGTTCGCTCTCGCCGCGCATGACCATCGAGCAGATCGTCGGCGAG
GGGTTGGCGCTGCATCAGCCGCACGTCAACGACGCCGAGCGCCGCCAGCGCGTGATCGAGGCGCTGCGCGAGGTCGGCCT
GGACCGCACCGCCCTGGGACGCTATCCGCATGAGTTCTCCGGCGGGCAGCGCCAGCGCATCGCCATTGCGCGGGTGCTGA
TCCTCAAGCCCCAGGTCCTGGTGCTGGATGAGCCGACTTCGGCACTCGACGTGTCGATCCAGCAGCAGGTGCTGTCGTTG
CTGTCCGCCCTTCAGAAAAAGTACAACCTGTCGTACCTGTTCATCAGCCACGACCTCGCCGTGATCCGTGCCATGTCGCA
CCGGGTGATGGTGATGAAGGACGGGAAGGTGGTGGAGGCGGGCGACACGGAAGCCGTGCTGGAGTCACCGTCCCACCCCT
ACACCTGCAAGCTGATGGCGGCTGCGGCGCTCAAGCCGCTTCAGCCGCCGGGCTGA

Protein sequence :
MTRVDLRSAKPDYDGPLLRLDDLSVRFEAEHNEWIEAVRHVSFDLHAGERFALVGESGSGKTVTALSIMRLLADAHYSGR
ILFEGRDLLAASERQMRGLRGADVAMVFQEPMTALNPLYTIGNQIVETLELHEGLDKRAAKARAIALLEHTGIAEAPRRF
DAFPHQLSGGQRQRAMIAMALACSPKLLVADEPTTALDVTVRMQILQLLRDLQAEYGMAVMLITHDLNMVRAFAERVGVM
ERGVLVETGETATVFSAPQHPYTVRLLESRPQRDVLPLVPLAPVLLEADQLTVTYDRHRPGFAGWFRADPFTAVDQVSLQ
LREGETLGIVGESGSGKTTLAQTLLGLQRPKAGDLRFLGSSLLGQTRDERRAVRARMQVVFQDPFGSLSPRMTIEQIVGE
GLALHQPHVNDAERRQRVIEALREVGLDRTALGRYPHEFSGGQRQRIAIARVLILKPQVLVLDEPTSALDVSIQQQVLSL
LSALQKKYNLSYLFISHDLAVIRAMSHRVMVMKDGKVVEAGDTEAVLESPSHPYTCKLMAAAALKPLQPPG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
oppDF2 YP_005681814.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 4e-73 44
oppDF2 YP_005683914.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 4e-73 44
cpfrc_01561 YP_003783961.1 hypothetical protein Not tested PiCp 6 Protein 4e-73 44
oppDF2 YP_005686002.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 4e-73 44
dppD YP_005160017.1 putative peptide ABC transport system ATP-binding protein Not tested Not named Protein 2e-87 43