Gene Information

Name : lolD (RSc1118)
Accession : NP_519239.1
Strain : Ralstonia solanacearum GMI1000
Genome accession: NC_003295
Putative virulence/resistance : Resistance
Product : lipoprotein releasing system ATP-binding ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1175005 - 1175739 bp
Length : 735 bp
Strand : +
Note : Product confidence : probable; Gene name confidence : predicted by Codon_usage; predicted by Homology; predicted by FrameD

DNA sequence : 
ATGAGTGAGGCCGTGATGACCGCCAACGAGACCACGCACCGCGCCGAGTGGGGTGATACCGCGGTGCTGCAGGCGCAGGG
ACTGGTCAAGGCGTTCAGGCAGGGGGGGCTGAATGTCGATGTGCTCAGGGGCGTCGACATCCGCATCGGCGTGGGCGAGA
AGGTCGCCATCGTCGGCGCGTCGGGCTCGGGCAAGAGCACGCTGCTGCATGTGCTGGGCGGGCTGGACGTGCCCACCTCG
GGCCGCGTGTCGCTGCTCGGCAAGCCGTTCACCGCCATGAGCGAGCGCGAGCGCAATACGCTGCGCAACCGCGCGCTGGG
CTTCGTCTACCAGTTCCACCACCTGCTGCCGGAGTTCACCGCGCTCGACAACGTCGCCATGCCGCTGCGCATCCGCGGCG
AGAACGAGGCGCAGGCGCGCCATACCGCGCAGGCCATGCTGGCGCGCGTGGGCCTGGGCGAGCGCACGGCGCACCGGCCG
GGCGAGCTGTCCGGCGGCGAGCGCCAGCGGGTGGCGATCGCGCGCGCGCTGGTGGGCTCGCCCGCCTGCGTGCTGGCCGA
CGAGCCCACCGGCAACCTCGACGACCACACCGCCGGCGAGGTCTTCGACCTGATGCTGGAGCTGACGCGCACGCTCGGCA
CCAGCTTCGTCATCGTCACGCACGATATCGACCTGGCCGGACGCTGCGATCGCATCCTGCGGCTGCGCGACGGGCATCTG
CACCAGGAACGGTAA

Protein sequence : 
MSEAVMTANETTHRAEWGDTAVLQAQGLVKAFRQGGLNVDVLRGVDIRIGVGEKVAIVGASGSGKSTLLHVLGGLDVPTS
GRVSLLGKPFTAMSERERNTLRNRALGFVYQFHHLLPEFTALDNVAMPLRIRGENEAQARHTAQAMLARVGLGERTAHRP
GELSGGERQRVAIARALVGSPACVLADEPTGNLDDHTAGEVFDLMLELTRTLGTSFVIVTHDIDLAGRCDRILRLRDGHL
HQER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-32 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD NP_519239.1 lipoprotein releasing system ATP-binding ABC transporter NC_008702.1.4606598. Protein 6e-33 47
lolD NP_519239.1 lipoprotein releasing system ATP-binding ABC transporter NC_012469.1.7686878. Protein 6e-40 42