Gene Information

Name : RSc0968 (RSc0968)
Accession : NP_519089.1
Strain : Ralstonia solanacearum GMI1000
Genome accession: NC_003295
Putative virulence/resistance : Unknown
Product : cp4-like integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1017298 - 1018473 bp
Length : 1176 bp
Strand : -
Note : -

DNA sequence :
ATGCCCCTCACCGATCTTTCCGCACGCAACGCCAAGCCCCAGGACAAGCCCTACCGCCTCGCCGATGGCCTGGGCATGTA
TCTGGAAGTCATGCCCAACGGCTCCAAGTACTGGCGCCTTAAATACCGCATTGCCGGAAAGGAAAAGCGGCTTGCCCTGG
GCGTCTACCCAAGTGTCGGCTTGGCCCAGGCCCGCACAGCGCGAGACGATGCCCGCCGCCTGATCGCCGCAGGCACCGAC
CCGTCGCAGGCCCGGAAAGAAGCCAAGCTGGCGACCACCACGGCCCGCACACACACTTTTGAAGTGGTGGCGCGGGAGTG
GCATGAAAAGCAGAGCGCCACATGGGTGCCGACTTACGCAACAAAAGTCTTGCACTCGCTGGAAACCGACATTTTTCCCG
ACCTGGGCGCGCGTCCCATCACAGAAATCACCGCCCCACAGATGCTGGCGACATTGCGCAAGGTGGAAAGCCGCGACGCG
CTTGAAACCGTGGCCCGTTTGCAACAACGTTGCTCTGCGGTATTCCGCTATGCCGTTGTCACAGGCCGCGCAGCACATAA
CCCTTGCACCGACCTGAAGGGCGCATTCAAGACCGCCAAGGTTCAGCATATGGCGCGCGTGCAAGCCAATGAAGTGCCGA
CGCTCATTAAAAATATTCGAGGCTACGACGGCGATCTAATCACACGCATTGCGCTGCAATTCATGGCGTTGACGTTTGTT
CGCACCAAGGAATTGATTGGGGCGCAATGGTCAGAGATTGATTTTGAGACGGAGGAATGGCGCATCCCCGCCGAGCGTAT
GAAGATGCGCGAACCGCATTTCGTCCCGCTGTCCTGGCAGGCAATTGCTCTGCTACGCGCAGCGGAGAAAATGACGGGGA
ACCGCCAGTACGTGTTTCAAAGCCCCAAGGGCAGGACGCACATCAGTAACAACACGATCCTCTATGCCCTGTACCGTCTG
GGCTACCACTCACGCATGACCGGCCACGGCTTCCGTGGTTTGGCCTCTACGATGCTGCACGAACAGGGATTCAACCCGGA
CGTGATTGAGCGCCAGTTGGCGCACGCCGAGCGCAACAAGGTGCGCGCCGCGTACAACCACGCGCAATACCTGCCGGAGC
GTCGCCGCATGATGCAGCATTGGGCCGACCATCTCGACCAGTTAGCGCAGGACTGA

Protein sequence :
MPLTDLSARNAKPQDKPYRLADGLGMYLEVMPNGSKYWRLKYRIAGKEKRLALGVYPSVGLAQARTARDDARRLIAAGTD
PSQARKEAKLATTTARTHTFEVVAREWHEKQSATWVPTYATKVLHSLETDIFPDLGARPITEITAPQMLATLRKVESRDA
LETVARLQQRCSAVFRYAVVTGRAAHNPCTDLKGAFKTAKVQHMARVQANEVPTLIKNIRGYDGDLITRIALQFMALTFV
RTKELIGAQWSEIDFETEEWRIPAERMKMREPHFVPLSWQAIALLRAAEKMTGNRQYVFQSPKGRTHISNNTILYALYRL
GYHSRMTGHGFRGLASTMLHEQGFNPDVIERQLAHAERNKVRAAYNHAQYLPERRRMMQHWADHLDQLAQD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec33 AAW51716.1 Int Not tested AGI-3 Protein 4e-88 52
int CAC39282.1 integrase Not tested LPA Protein 3e-88 52
int AAD44730.1 Int Not tested SHI-2 Protein 1e-87 52
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-88 51
int ACU09430.1 integrase Not tested LEE Protein 2e-88 51
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 3e-88 51
ECs4534 NP_312561.1 integrase Not tested LEE Protein 3e-88 51
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 4e-86 51
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 4e-86 51
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-86 51
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 1e-70 47
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 1e-70 47
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 9e-71 47
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-69 47
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-70 47
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 1e-70 47
int AAK16198.1 Int Not tested PAI-I AL862 Protein 8e-71 47
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 8e-71 47
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-70 47
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 8e-85 46
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 6e-70 46
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-70 46
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 3e-70 46
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-70 46
int AAK00456.1 Int Not tested SHI-1 Protein 5e-63 46
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 8e-70 46
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 8e-70 46
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 6e-70 46
int AAL51028.1 CP4-like integrase Not tested LEE Protein 6e-70 46
int-phe AAL60261.1 Int-phe Not tested LEE Protein 6e-70 46
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 4e-69 46
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 7e-81 45
int CAC81896.1 integrase Not tested LEE II Protein 3e-62 45
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 4e-61 44
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-65 43
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 7e-69 43
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 7e-69 43
intA AAB00935.1 integrase A Not tested vap locus Protein 1e-55 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSc0968 NP_519089.1 cp4-like integrase VFG0783 Protein 1e-88 51
RSc0968 NP_519089.1 cp4-like integrase VFG0598 Protein 2e-86 51
RSc0968 NP_519089.1 cp4-like integrase VFG0626 Protein 5e-71 47
RSc0968 NP_519089.1 cp4-like integrase VFG1693 Protein 4e-71 47
RSc0968 NP_519089.1 cp4-like integrase VFG1536 Protein 2e-61 44