|
Name : lysS (all4071) Accession : NP_488111.1 Strain : Nostoc sp. PCC 7120 Genome accession: NC_003272 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 4899267 - 4900952 bp Length : 1686 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCGGAAGAAGATATCCGTGCCGCTAGGCTGGAGAAAGTAGAACAACTCAAGCAGCTAGGGACTAACCCCTATGCTTA CCGTTGGGAGTCTACTCATCACGCCGCCCAATTGCAAGAAAAATTTGCTGATTTAACCAGTGGTGAAGAAGTCGAGACAG AAGTTGCCATTGCCGGACGCATTATGGCGCGTCGCGTTTTCGGTAAATTGGCTTTCTTCACCTTGGAGGATGAAACAGGC ACTATTCAGCTTTATTTAGAGAAAAATCGTATCCAAGAAAGCATGGCAGAAATTGATGCCAATGCTTTTAATCATCTCAA ACAACTCACCGATGTAGGGGATATTCTGGGAGCCAAGGGAACAATAAAACGGACTGAAAAGGGCGAGTTATCGGTTTACG TCAAAGAATATACCATCCTCACCAAATCCCTACTGCCGCTACCCGACAAGTGGCATGGGTTAACGGATGTTGCCAAACGC TACCGTCAACGCTACGTTGATTTGATTGTTAACCCCGAAGTCCGCCAAACTTTCCGCCGTCGCGCCCAAATCACGGCCGG GATTCGCCGCTATTTGGAACAAAGGGATTTTCTAGAGATTGAAACCCCTGTTTTACAAAGTGAAGCCGGCGGTGCTGATG CGCGTCCCTTCGTCACTTACCACAACACCTTAGAAATGGAGTTGTATCTACGAATAGCAACAGAACTCCACCTCAAGCGG TTGATTGTCGGTGGTTTTGAAAAGGTGTTTGAATTGGGGCGAATTTTCCGTAATGAAGGGATTTCCACCAGACACAACCC TGAATTTACCTCAATTGAAGTTTATCAAGCCTACGCCGACTACAACGATATGATGGCTCTAACAGAAGGTATTATCACCA CTGTGGCCCAAGATGTACTCGGCACACTGCAAATTACCTACCAAGGCGAAACGGTAGATTTGACACCACCTTGGCGACGG GTGACAATGCACGATTTAGTAAAAGAATATACAGGATTGGATTTCCATTCTTTCCAAACACTAGAAGAAGCGAAATCAGC AGGTAAAAATGCTGGGATTCCTGGTGTAGATGAAGCCCAAACTATAGGTAAAATCCTGAATTTAGCATTTGAAGAAAAGG TAGAAACAAAGTTAATTCAGCCTACCTTTGTAATTGATTATCCTGTGGAAATTTCGCCATTAGCTAAACCTCACCGTTCT CAACCTGGGTTAGTAGAAAGATTTGAATTATTCATAGTCGGGCGGGAGACTGCGAATAGTTTCTCAGAATTAACAGATCC CATCGACCAAAGAGAACGCCTAGAAGCCCAAGCAGCCAAAAAAGCCGCCGGTGACTTAGAAGCCCAAGGTGTAGATGAAG ACTTCTTGACTGCGTTGGAATACGGGATGCCACCTACAGGAGGTTTAGGTATTGGGATTGATCGGTTAGTCATGTTATTA ACTGATTCTGCCAGTATTCGGGATGTGATTGCTTTCCCTTTACTCAAACCAGAAGGCAGCTTTATTAAGGCATATCGCTA TGAGCCAACAACTCAAACACTGACTCTTGAATTTGATAGTGGAAGTATTTACGAATATTTCAAAGTACCGCTTACTGTTA AAGAAGAATTAGACAATGCACCGTCTAAGGGTCAATATTTCCATAAGTTTATTAAAGGGCAATTCAAGTATGAACAATTG AGTTGA Protein sequence : MSEEDIRAARLEKVEQLKQLGTNPYAYRWESTHHAAQLQEKFADLTSGEEVETEVAIAGRIMARRVFGKLAFFTLEDETG TIQLYLEKNRIQESMAEIDANAFNHLKQLTDVGDILGAKGTIKRTEKGELSVYVKEYTILTKSLLPLPDKWHGLTDVAKR YRQRYVDLIVNPEVRQTFRRRAQITAGIRRYLEQRDFLEIETPVLQSEAGGADARPFVTYHNTLEMELYLRIATELHLKR LIVGGFEKVFELGRIFRNEGISTRHNPEFTSIEVYQAYADYNDMMALTEGIITTVAQDVLGTLQITYQGETVDLTPPWRR VTMHDLVKEYTGLDFHSFQTLEEAKSAGKNAGIPGVDEAQTIGKILNLAFEEKVETKLIQPTFVIDYPVEISPLAKPHRS QPGLVERFELFIVGRETANSFSELTDPIDQRERLEAQAAKKAAGDLEAQGVDEDFLTALEYGMPPTGGLGIGIDRLVMLL TDSASIRDVIAFPLLKPEGSFIKAYRYEPTTQTLTLEFDSGSIYEYFKVPLTVKEELDNAPSKGQYFHKFIKGQFKYEQL S |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 8e-108 | 48 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 4e-84 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | NP_488111.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 5e-108 | 48 |
