Gene Information

Name : all3574 (all3574)
Accession : NP_487614.1
Strain : Nostoc sp. PCC 7120
Genome accession: NC_003272
Putative virulence/resistance : Virulence
Product : ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 4317756 - 4318601 bp
Length : 846 bp
Strand : -
Note : ORF_ID:all3574

DNA sequence :
ATGTTAGAAGCTTTAATTGAACCGTTGCAATATGGCTTTATGCAGCGATCGCTTGTGATTGCTATTTTAGTGGGTTTGTT
GTGTGCGGTTGTTGGTAGTTACTTGATGGTGCAAAGATTAGCGCTGTTGGGTGATGCTATCAGTCACTCAGTTTTGCCAG
GACTAGCGATCGCTTTCATGGTAGGCGCTAACATATTTGTGGGAGCATTTATTGCTGGGGTTTTGAGTACGATAGCGATC
GCTTGGATTAGGACGCGATCGCCCATCAAAGAAGATGCTGCAATGGGTATAGTATTTTCAGCATTCTTTGCCTTGGGTAT
TACATTGATTACCGTTGTTCAAAAAGATAATAAAATCGACCTCAATCACTTTCTCTTTGGTAATATCCTTGGCGTGACTG
TTGATGAGGTGCGTGATACCGCCATCATCGCCGCTATTGTTTTAACGGTCGTAATTTTGTTATATAAAGAACTACTATTT
TACACCTTCGATCCTTTAGGCGCTCAAGCCGCAGGCTTACCAGTAAATCGCTTAAACTTTGGTTTAATGCTACTGATTGC
CTTAACAATTGTCGCCAGCATGAAAGCAGTAGGCGTAATCTTAGTACTATCACTGTTAATTACACCAGGTGCAACCGCTT
ACCTATTAGTGAAACGCCTACACCAAGTCATGATTTTAGGCGCAGGGATAGGCGTTTTTTCCAGCATTAGCGGTATGTAT
CTGAGTTACTTTTATAATTTACCTTCCGGCCCAGCGATCGTTTTAGTAGTTTCAGGACTATTCCTATTGGCATTGTTATT
CAGCCCCAAACATGGGATTTTAATCCCCACCGTATATCAAAAATAA

Protein sequence :
MLEALIEPLQYGFMQRSLVIAILVGLLCAVVGSYLMVQRLALLGDAISHSVLPGLAIAFMVGANIFVGAFIAGVLSTIAI
AWIRTRSPIKEDAAMGIVFSAFFALGITLITVVQKDNKIDLNHFLFGNILGVTVDEVRDTAIIAAIVLTVVILLYKELLF
YTFDPLGAQAAGLPVNRLNFGLMLLIALTIVASMKAVGVILVLSLLITPGATAYLLVKRLHQVMILGAGIGVFSSISGMY
LSYFYNLPSGPAIVLVVSGLFLLALLFSPKHGILIPTVYQK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 8e-43 42
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 1e-42 42
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-45 41
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-45 41
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-45 41
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-45 41
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-45 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
all3574 NP_487614.1 ABC transporter permease BAC0442 Protein 5e-45 43
all3574 NP_487614.1 ABC transporter permease BAC0352 Protein 1e-45 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
all3574 NP_487614.1 ABC transporter permease VFG0528 Protein 1e-45 41