Gene Information

Name : rpaA (all0129)
Accession : NP_484173.1
Strain : Nostoc sp. PCC 7120
Genome accession: NC_003272
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 133034 - 133777 bp
Length : 744 bp
Strand : -
Note : ORF_ID:all0129

DNA sequence : 
ATGCCAAGGATTCTTGTAATAGACGATGACCCAGCGATTTCAGAACTTGTTGCTGTCAACCTAGAGATGGCTGGCTACGA
TGTAAGCCAAGCTGAAGATGGCATAAAAGGTCAAGCACTAGCTCTCCAGCTACAACCAGACTTGATTATGCTTGATCTGA
TGTTGCCTAGAGTTGATGGTTTCACGGTTTGCCAGCGCTTACGCCGAGACGAACGGACGGCAGAAATTCCTGTTTTGATG
TTGACTGCTCTCAGCCAAACTCAAGACAAGGTAGAAGGCTTTAACGCCGGAGCAGATGATTATCTGACCAAACCATTTGA
AGTGGAAGAGATGCTGGCACGGGTGCGGGCATTATTACGCCGTACCGACCGCATTCCCCAAGCAGCCAAACATAGCGAAA
TTTTGAACTATGGGCCTCTGACCTTAGTTCCCGAAAGATTTGAGGCTATATGGTTCGGTCAAACTGTGAAACTGACTCAC
TTGGAATTTGAACTCCTCCACTGTTTGCTACAACGTCACGGACAAACAGTTTCCCCAAGCGAAATCCTCCGAGAAGTTTG
GGGTTACGATCCAGATGATGACATTGAAACGATTCGAGTGCATATCCGGCACTTGAGAACTAAGCTAGAACCAGACCCCC
GCCACCCCCGCTATATCAAAACAGTATATGGTGCGGGATATTGTCTGGAACTACCCAGCGTCCCACAATCCGGCGAGGGC
GCTACCACATCAGTTGTTGAGTGA

Protein sequence : 
MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFTVCQRLRRDERTAEIPVLM
LTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTDRIPQAAKHSEILNYGPLTLVPERFEAIWFGQTVKLTH
LEFELLHCLLQRHGQTVSPSEILREVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPSVPQSGEG
ATTSVVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rpaA NP_484173.1 two-component response regulator BAC0308 Protein 2e-28 42
rpaA NP_484173.1 two-component response regulator NC_002952.2859905.p0 Protein 4e-40 42
rpaA NP_484173.1 two-component response regulator NC_012469.1.7685629. Protein 1e-39 42
rpaA NP_484173.1 two-component response regulator NC_009782.5559369.p0 Protein 6e-40 42
rpaA NP_484173.1 two-component response regulator NC_002951.3237708.p0 Protein 6e-40 42
rpaA NP_484173.1 two-component response regulator NC_003923.1003749.p0 Protein 5e-40 42
rpaA NP_484173.1 two-component response regulator NC_002758.1121668.p0 Protein 6e-40 42
rpaA NP_484173.1 two-component response regulator NC_009641.5332272.p0 Protein 6e-40 42
rpaA NP_484173.1 two-component response regulator NC_013450.8614421.p0 Protein 6e-40 42
rpaA NP_484173.1 two-component response regulator NC_007793.3914279.p0 Protein 6e-40 42
rpaA NP_484173.1 two-component response regulator NC_007622.3794472.p0 Protein 4e-40 42
rpaA NP_484173.1 two-component response regulator NC_002745.1124361.p0 Protein 6e-40 42
rpaA NP_484173.1 two-component response regulator HE999704.1.gene2815. Protein 3e-41 42
rpaA NP_484173.1 two-component response regulator CP001918.1.gene5135. Protein 5e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rpaA NP_484173.1 two-component response regulator VFG1390 Protein 1e-36 43
rpaA NP_484173.1 two-component response regulator VFG0596 Protein 1e-27 41