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Name : hsdR (BF1836) Accession : YP_211471.1 Strain : Bacteroides fragilis NCTC 9343 Genome accession: NC_003228 Putative virulence/resistance : Unknown Product : type I restriction enzyme R protein Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 2141547 - 2144312 bp Length : 2766 bp Strand : + Note : Similar to Campylobacter jejuni type I restriction enzyme R protein HsdR SWALL:Q8RJ98 (EMBL:AF486635) (987 aa) fasta scores: E(): 2.1e-43, 40.94% id in 977 aa, and to Bacteroides thetaiotaomicron type I restriction enzyme EcoR124II R protein BT4535 SWALL: DNA sequence : ATGACAATACAGTCAGAACAAGCATTAGAGCAAGGTTTGATAAAAACACTAGTCTCTATGAATTATCAGAAGATTGAAAT AGCAGATGAAAATGCTCTGATTGTCAATTTTCGTAATCAACTTAATATACATAACAATATCGAGCTTACCGATGATGAGT TTAATCGAATAATGATTCATTTGGACAGTGGCTCAATATTCGTAAAAGCAGAAAAACTTCGTAATCGCTTCCCACTCACT CGTGATGATGAGTCGGTAAAGTGGATTGAGTTCCTAAACACACAAGAGTGGTGTAAGAATGAATTTCAGGTTTCCAATCA GATTACCGATGAGGGTAGACGTAAATGTAGGTATGATGTTACGATTTTGGTTAATGGACTACCGCTGGTACAAGTGGAGC TGAAAAAACGTGGTGTAGAACTTAAACAGGCATACAGCCAAGTTCAACGCTACCACAAAACAGCATTCAAGGGACTATTT AACTATATTCAGATATTTGTCATCTCAAACGGTGTAAACACTCGCTACTTCGCCAATAATCCAAATCAAGGATATAAGTT TACATTCCCTTGGGCAGATTTCAAAAACAACCATATTGACAGATTAGATCTCTTTGCTGCGATGTTTTTTGAACAATGTA CACTGGGGAAAATGCTTGCCAAATATGTTGTGTTGCACCAATCAGACAAGTGCCTGATGATTCTCAGACCGTATCAATTT TATGCAGTTGAGGCTTTGCTTGACAAGGTTGCTAACTCTGTCAAGAACGGATATATTTGGCACACTACAGGCAGTGGTAA GACGCTTACATCCTTTAAAGCGGCTCAACTAATAGCCGAAATGAGTGATATTGATAAAGTGCTATTTGTTGTTGACAGGC ACGATTTGGATACCCAAACCAAGAAAGAGTATGATGCTTTTGCTCCGGGAGCAGTGGATAGTACCGACAATACAAAAGAG TTGGTGAAGGCATTGCAGGGCAAGAAAAAACTGATGATTACTACAATTCAAAAACTGAATAACGCAGTTCAGAAAGATAG ATACAGTAAAGGCTTACAAGGGGTAAAAGATAAAAATATTGTAATGATATTTGATGAGTGTCACCGCAGCCAGTTCGGAG AAATGCATTCTAATATAACAGGCTTTTTTAGCAAAATCCGCTACTTTGGATTTACAGGAACCCCCATTTTTGCGGACAAT GCCAACAATGGTTGCACAACAAAAGATATTTTTGGTGAAAGACTTCACGAATATCTAATCAAAGATGCTATTGCAGATGA AAACGTACTCGGATTCTTGGTGGAGTATCATGGCAAATGGAAACGAAAAAGTGAAAACGACAAACAGGTTAAATCTATTG ATACAGCAGAAGTACTATTGAAGGATGAAAGGATAGCCTCAATAACCGATTTTATACTTTCCAACTATAACTCTTCGACA TACGAAAGAGATTTCAATGCGATGTTGGCAGTTGGTGGAGTTAAAATGCTCATTAAATATTACGATATGTTTAAGAGTCG CAACCACGACTTAAAGATTGCTACGATCTTCACATATACTCAAAATGAAGAATCAGAGGACGAATTTACAGGTTTAGGGC AAGGATTTGTTTCTGTTCAAAACACCCGAGATATTTTAGAGAGCTATATCAAAGATTACAACGAGACATTTGGGACGGAA TTTGACACAGACCATTTCGGGCTATACTACGATGATATCAATAAGCGAATGAAAAACCGTCAAATCGACCTCTTGATAGT CTCCGATATGTTTCTTACGGGGTTCGATGCTAAGAAACTCAATACACTTTACGTCGACAAAAACCTCAACTATCACGGTC TATTACAAGCATTTTCACGAACAAATCGCGTGCTGAATGAGAAGAAAAAATTTGGTAAAATCACTTGTTTCAGAGACCTT AAACAACAGACGGACGATGCAATAAAACTTTACTCCAATAACAAATCGTCAGAGGTAGTCTTAATGAAACCTTACGAAAA ACTTGTTGAGCGATTCAATGAGATGGCAGCCGAATTTTTATCCTATTTCCCTACGGTAAAAAGCGTTGGCAACTTAGAAT CAGAGTTAGACAAACGCCGCTTTGTCATTCTCTTCAGAGCAATGCTAAGACTAAGAAATGAGGTGAAGGGATATAATGAA TTTGATGCAGAAGATCTTACAATTGAAGAACAACGATTTGCGGACTATCAAAGCAAATACCTTGATATGTCCAATGAGTT TGCTATTACCTCGGAAAAGGAAGATGCCGAAAGTATTCTGCAAGATATAGATTTTGAGTTAGAATTAGTGCACCGAGATA TTATCAATGTGATGTATATTCTTGCTCTGCTTCAAGACCTCAAGCCGGAGTCTTCATCATATCCAAAAGACAGGAAAGCG GTTCTTGACACAATGGACTCCAACCCTGAACTGCGTTCTAAGATTGCCCTAATCGACAACTTTATCAAGTTGCATATTGA CGGACGGCAAAGCAATGATTTACCTGCTGATATGGAGAGCGATTTGGATAAATACATTGCCACTCAAAAGGCTATTGCCA TAGAGCAAGTTGCCACAGAGGAGGGGATTGATAGTACCCTATTGCACGAATATATTTCTGAATATGAGTATTTAGGGAAA CCTAAAAACGAAATTATCAAACGAGCCATTGATCCGCTTAAATTATCATTTATGGATGCTCAATCCAAAAAAAAGAGTCT AATCGACAAAATGAAAGATATTATTAAACTGTTTAGCTGGAATTAA Protein sequence : MTIQSEQALEQGLIKTLVSMNYQKIEIADENALIVNFRNQLNIHNNIELTDDEFNRIMIHLDSGSIFVKAEKLRNRFPLT RDDESVKWIEFLNTQEWCKNEFQVSNQITDEGRRKCRYDVTILVNGLPLVQVELKKRGVELKQAYSQVQRYHKTAFKGLF NYIQIFVISNGVNTRYFANNPNQGYKFTFPWADFKNNHIDRLDLFAAMFFEQCTLGKMLAKYVVLHQSDKCLMILRPYQF YAVEALLDKVANSVKNGYIWHTTGSGKTLTSFKAAQLIAEMSDIDKVLFVVDRHDLDTQTKKEYDAFAPGAVDSTDNTKE LVKALQGKKKLMITTIQKLNNAVQKDRYSKGLQGVKDKNIVMIFDECHRSQFGEMHSNITGFFSKIRYFGFTGTPIFADN ANNGCTTKDIFGERLHEYLIKDAIADENVLGFLVEYHGKWKRKSENDKQVKSIDTAEVLLKDERIASITDFILSNYNSST YERDFNAMLAVGGVKMLIKYYDMFKSRNHDLKIATIFTYTQNEESEDEFTGLGQGFVSVQNTRDILESYIKDYNETFGTE FDTDHFGLYYDDINKRMKNRQIDLLIVSDMFLTGFDAKKLNTLYVDKNLNYHGLLQAFSRTNRVLNEKKKFGKITCFRDL KQQTDDAIKLYSNNKSSEVVLMKPYEKLVERFNEMAAEFLSYFPTVKSVGNLESELDKRRFVILFRAMLRLRNEVKGYNE FDAEDLTIEEQRFADYQSKYLDMSNEFAITSEKEDAESILQDIDFELELVHRDIINVMYILALLQDLKPESSSYPKDRKA VLDTMDSNPELRSKIALIDNFIKLHIDGRQSNDLPADMESDLDKYIATQKAIAIEQVATEEGIDSTLLHEYISEYEYLGK PKNEIIKRAIDPLKLSFMDAQSKKKSLIDKMKDIIKLFSWN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0054 | YP_300144.1 | type I site-specific restriction-modification system restriction subunit | Not tested | SCC15305cap | Protein | 1e-179 | 43 |
