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Name : clpB (BF1172) Accession : YP_210841.1 Strain : Bacteroides fragilis NCTC 9343 Genome accession: NC_003228 Putative virulence/resistance : Virulence Product : heat shock ClpB protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1427359 - 1429947 bp Length : 2589 bp Strand : - Note : Similar to Synechococcus sp. heat shock ClpB protein SWALL:CLPB_SYNP7 (SWALL:P53533) (883 aa) fasta scores: E(): 6.3e-144, 54.86% id in 873 aa, and to Bacteroides thetaiotaomicron endopeptidase Clp ATP-binding chain B BT4597 SWALL:AAO79702 (EMBL:AE016945) DNA sequence : ATGAACTTTAACAATTTTACCATTAAATCTCAGGAAGCTGTACAAGAGGCTATTAACCTGGCACAAAGTCGGGGGCAACA AGCCATCGAAACGGCTCATATCCTGTATGGAGTGATGAAGGTAGGCGAAAATGTGACTAACTTTATCTTTCAGAAGTTAG GACTGAACGGACAACAAATCTCCCTCGTACTCGATAAGCAGATCGACTCTTTCCCAAAAGTTTCCGGCGGAGAACCTTAC TTGAGTAGGGAAGCGAACGAAGTCTTTCAAAAAGCAACGCAGTACTCCAAGGAGATGGGCGATGAGTTTGTTTCATTGGA ACATCTTTTGCTGGCTTTACTGACAGTAAAGAGCACGGTATCTACCATCCTGAAAGATGCAGGAATGACCGAAAAAGAAT TGCGTGGTGCCATCAGTGAATTGAGAAAAGGAGAAAAGGTGACCTCTCAGTCCAGTGAAGATAATTACCAGTCACTGGAA AAATATGCCATTAACTTAAATGAAGCAGCCCGTAGCGGTAAACTCGACCCTGTGATCGGACGTGATGAAGAAATCCGACG GGTACTTCAGATTTTAAGTCGACGTACAAAAAACAATCCTATACTAATAGGTGAACCGGGTACCGGTAAAACAGCTATTG TTGAGGGATTGGCACACCGTATTCTTCGGGGTGATGTTCCTGAAAACCTGAAAAATAAACAGGTATACTCACTTGATATG GGCGCACTCGTTGCAGGAGCTAAATATAAAGGAGAATTTGAGGAACGACTGAAATCGGTAGTGAATGAGGTGAAGAAATC AGAAGGTAATATCATATTATTCATTGATGAAATCCATACTTTGGTAGGGGCAGGAAAAGGAGAAGGTGCTATGGACGCAG CTAATATTCTGAAACCTGCACTTGCCCGTGGAGAACTACGCTCTATCGGTGCTACCACTCTCGACGAATATCAGAAATAT TTTGAAAAAGATAAAGCTTTGGAACGTCGTTTCCAAATAGTACAGGTAGATGAACCAGACAATCTGAGCACAATATCTAT CTTACGTGGATTAAAAGAACGGTATGAAAATCACCATCACGTACGTATCAAAGATGATGCAATCATTGCTGCCGTAGAAT TAAGCAGCCGGTACATCACTGACCGTTTTTTACCCGATAAAGCAATTGACCTGATGGACGAAGCTGCCGCAAAACTTCGC ATGGAGGTGGATTCTGTCCCTGAAGGATTAGATGAAATCTCACGAAAGATTAAACAGCTGGAGATTGAGCGAGAAGCTAT AAAACGGGAAAATGATGAACCGAAATTACAGACAATCGGCAAAGAATTGGCTGAATTGAAAGAACAGGAAAAGTCATATA AAGCAAAATGGCAAAGCGAGAAAAGCCTGATGGATATAATCCAGCAGAACAAAGTTGAAATAGAAAATCTTAAATTCGAA GCTGACAAGGCAGAACGTGAGGGAAACTATGGCAAAGTTGCAGAGATTCGCTATGGCAAATTGCAGGAACTGCATAAGGA AATTGAAGATACCCAGAAAAAATTGCACGAAATGCAAGGGGATACAGCCATGATAAAAGAAGAGGTGGATGCTGAAGACA TCGCTGACGTAGTATCCCGCTGGACCGGAATTCCTGTAAGCAAAATGATGCAGAGTGAAAAGGACAAATTGCTCCACCTT GAAGAAGAATTACATCAGCGTGTTATCGGACAAGACGAGGCTATCGCAGCTGTGTCTGATGCTGTACGCCGCAGCCGTGC AGGCTTACAGGATCCCAAACGACCTATTGGTTCCTTCATCTTCCTGGGCACTACAGGAGTTGGTAAAACCGAACTTGCCA AAGCGCTTGCCGAATTTCTGTTTGACGATGAAACGATGATGACCCGTATCGACATGAGCGAATACCAGGAGAAGCACAGC GTTTCGCGTTTAGTTGGAGCGCCTCCGGGATATGTAGGATATGACGAAGGCGGACAATTGACAGAGGCGATCCGTCGCAA ACCCTATTCTGTAGTATTGTTTGATGAAATCGAGAAAGCACATCCGGATGTATTTAATATCTTGTTGCAGGTACTCGATG ACGGACGGTTGACAGATAACAAAGGCCGTGTGGTAAACTTTAAAAATACAATCATCATTATGACCTCTAATATGGGTAGC AGCTACATACAGAGCCAGATGGAAAAACTGAACGGCGCCAACAACGAGGAAGTAGTGGAAGAAACCAAGAAAGAGGTAAT GAACATGTTAAAGAAAACCATCCGTCCGGAATTCCTAAACCGTATCGATGAGACTATCATGTTCCTGCCATTAACAGAAA AAGACATAAAACAGATTGTCTTGTTACAGATTAAGAGCGTACAAAAGATGCTTGCCGGTAATGGAATAGAACTAGAACTG ACAGATGCGGCTTTGGATTTCCTCTCACAGGTCGGCTATGATCCGGAATTCGGTGCACGTCCTGTAAAAAGGGCTATTCA GAGATATTTACTCAACGATCTATCGAAAAAATTATTGGCACAGGAAGTAGACCGTAGTAAAGCAATCATTGTAGATGCAC AAGGAGACGGATTAGTTTTCCGTAACTAA Protein sequence : MNFNNFTIKSQEAVQEAINLAQSRGQQAIETAHILYGVMKVGENVTNFIFQKLGLNGQQISLVLDKQIDSFPKVSGGEPY LSREANEVFQKATQYSKEMGDEFVSLEHLLLALLTVKSTVSTILKDAGMTEKELRGAISELRKGEKVTSQSSEDNYQSLE KYAINLNEAARSGKLDPVIGRDEEIRRVLQILSRRTKNNPILIGEPGTGKTAIVEGLAHRILRGDVPENLKNKQVYSLDM GALVAGAKYKGEFEERLKSVVNEVKKSEGNIILFIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKY FEKDKALERRFQIVQVDEPDNLSTISILRGLKERYENHHHVRIKDDAIIAAVELSSRYITDRFLPDKAIDLMDEAAAKLR MEVDSVPEGLDEISRKIKQLEIEREAIKRENDEPKLQTIGKELAELKEQEKSYKAKWQSEKSLMDIIQQNKVEIENLKFE ADKAEREGNYGKVAEIRYGKLQELHKEIEDTQKKLHEMQGDTAMIKEEVDAEDIADVVSRWTGIPVSKMMQSEKDKLLHL EEELHQRVIGQDEAIAAVSDAVRRSRAGLQDPKRPIGSFIFLGTTGVGKTELAKALAEFLFDDETMMTRIDMSEYQEKHS VSRLVGAPPGYVGYDEGGQLTEAIRRKPYSVVLFDEIEKAHPDVFNILLQVLDDGRLTDNKGRVVNFKNTIIIMTSNMGS SYIQSQMEKLNGANNEEVVEETKKEVMNMLKKTIRPEFLNRIDETIMFLPLTEKDIKQIVLLQIKSVQKMLAGNGIELEL TDAALDFLSQVGYDPEFGARPVKRAIQRYLLNDLSKKLLAQEVDRSKAIIVDAQGDGLVFRN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 4e-157 | 45 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 4e-100 | 42 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 3e-100 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_210841.1 | heat shock ClpB protein | VFG2084 | Protein | 8e-109 | 43 |
