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Name : lin0047 (lin0047) Accession : NP_469394.1 Strain : Listeria innocua Clip11262 Genome accession: NC_003212 Putative virulence/resistance : Unknown Product : replicative DNA helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0305 EC number : - Position : 49394 - 50746 bp Length : 1353 bp Strand : + Note : highly similar to replicative DNA helicases; unwinds double stranded DNA DNA sequence : GTGGATAATAATTTCCAGGACAGAACACCACCACAAAATATTGAAGCCGAACAAGCTGTACTGGGCGCGATATTTCTTGA GCCGAATGCGCTGATTACTGCTTCTGAAATTTTAATGCCGGATGATTTTTATCGAACTGGTCACCAAATCATTTTTGAAA CGATGCTTGATTTGAATGACCACGGGAAGGCTGTCGATGTTTTAACAGTATATGAGGCGCTTGCTGCCAAGGGTAATTTA GAAGATGCGGGTGGTTTGCCTTATTTGACGGAATTATCCGGTGCTGTACCAACTGCGGCTAACTTGGAATACTATGCCCA TATTATCGAGGACAAGGCGCTTCTCAGACGTTTAATTAGAACTGCTACCCAAATTGCAACAGATGGTTATTCGCGCGAAG ACGAGCTCGATATGCTTATGGACGAAGCGGAAAAGAGTATCTTGGAAGTTTCGCAGCGTAAAAATGTTGGTGCATTCAAG AATATTAAAGATGTCCTAGTTAAAACTTATGATGATATTGAAATTTTGCATAATCGTAAAGGTGATATTACTGGTATTCC GACTGGATTTAACGAGCTGGACAAAATGACAGCTGGATTTCAGCGGAATGATTTAATTATTGTTGCCGCGCGTCCTTCCG TTGGTAAAACAGCATTCGCCTTAAATATCGCGCAAAATGTTGCAACGAAAACAGACGAGAATGTGGCCATTTTTAGTTTG GAAATGGGTGCGGAACAACTTGTTATGCGTATGCTTTGTGCGGAAGGAAATATTAATGCGCAGAATTTACGGACGGGTGC TTTAACGAGCGATGATTGGCAAAAGCTGACAATCGCGATGGGTACACTTTCTAATTCTGGGATTTATATTGATGATACGC CGGGTGTTCGTGTGAATGAGATTCGTTCCAAATGTCGTCGTTTAAAACAAGAAACAGGTCTTGGTATGATCGTAATCGAC TACTTGCAACTTATTGCGGGGAGCGGTCGTGGCGGTGAAAATAGGCAACAAGAGGTTTCTGAGATTTCTCGGTCGTTAAA AGCTTTGGCGCGGGAACTTGAAGTACCGGTAATTGCCCTTTCACAGTTGTCTCGTAGTGTAGAGCAACGTCAAGATAAAC GTCCAATGATGTCAGATATTCGTGAATCGGGTTCGATTGAGCAAGATGCGGATATTGTAGCCTTTTTATACCGGGAAGAT TACTATGATCGGGAAGGTGAAAATGACGGTACGATTGAGATTATTATTGCAAAACAACGTAATGGTCCGGTCGGTGACGT GAAATTAGCCTTTGTAAAAGAATACAATAAGTTTGTGAATTTAGAAGTGCGTTATGATGACGCAATGGCTTAA Protein sequence : MDNNFQDRTPPQNIEAEQAVLGAIFLEPNALITASEILMPDDFYRTGHQIIFETMLDLNDHGKAVDVLTVYEALAAKGNL EDAGGLPYLTELSGAVPTAANLEYYAHIIEDKALLRRLIRTATQIATDGYSREDELDMLMDEAEKSILEVSQRKNVGAFK NIKDVLVKTYDDIEILHNRKGDITGIPTGFNELDKMTAGFQRNDLIIVAARPSVGKTAFALNIAQNVATKTDENVAIFSL EMGAEQLVMRMLCAEGNINAQNLRTGALTSDDWQKLTIAMGTLSNSGIYIDDTPGVRVNEIRSKCRRLKQETGLGMIVID YLQLIAGSGRGGENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRED YYDREGENDGTIEIIIAKQRNGPVGDVKLAFVKEYNKFVNLEVRYDDAMA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| PMI2640 | YP_002152342.1 | DNA helicase | Not tested | Not named | Protein | 1e-71 | 42 |
| unnamed | ABR13456.1 | replicative DNA helicase | Not tested | PAGI-5 | Protein | 1e-80 | 41 |
| dnaB2 | YP_001007676.1 | putative DNA helicase | Not tested | YAPI | Protein | 2e-72 | 41 |
