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Name : lin2827 (lin2827) Accession : NP_472155.1 Strain : Listeria innocua Clip11262 Genome accession: NC_003212 Putative virulence/resistance : Unknown Product : hypothetical protein Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG2205 EC number : - Position : 2840169 - 2842859 bp Length : 2691 bp Strand : - Note : similar to the two components sensor protein kdpD DNA sequence : ATGGAGACGAATCGTCCAAGTCCGGATGCGCTACTCGTGAATTTGCAAGAAGAAGCAGATTCATCAGTAGGTAAATTAAA AATATATTTTGGATTTGCAGCAGGTGTTGGGAAAACTTACGCCATGTTAAGTGACGCCAAAGATCAATTAGCAGCAGGTG TGGATGTCGTGGCGGGTTATATTGAACCTCATGCCCGCGAGGAAACGCTGAGAATGTTAGAAGGAATTCCGATTATCCCT CCTAAAGCAATCAATCATAAAAATATCGCGCTCAAAGAATTCGATTTGGACGAAGCGTTGAAACGAAAACCGGAACTTAT TTTGGTAGACGAACTCGCACATACGAATGCATCAGGCGTACGCAATAAGAAACGTTTCCAAGATGTGGAAGAATTGCTTC AAGCGGGAATTGATGTATATACGACTGTCAATGTGCAACATATTGAAAGTTTAAACGATATTGTAGAAGGCATCACCAAG GTAGCTGTTCGCGAAACGATTCCTGACTATGTTTTTGATGAGGCGGACCGAGTTAAGTTAATTGATATTGAACCCGATGA ACTTCTAAAACGACTAGAACAAGGCAAAATTTACCAACCAGCGCGCGCAAAAACAGCGATGCAGAACTTCTTCACTAGAG AAAATTTAAAACTCTTACGCGAAATTGCGATGCGAAAAGCGGCCGACCGAATTAGTCATGAATACGATCAAACAGGGATT TATCCAGAAAAACGGGCGAGTAGTAAATGGCTAGTCTGTATTGGGACGTCGCCTTCGTCTGCAAAACTCATTCGCTGGAC AGCGCGCACTGCCGAGGCTTTCCGCGCACCGTGGACTGCCCTTTATATTGAAAATGAAGAAAATGATTACATGACTAAAG CGGAGAAAAAATGTTTGCGGGAAACGATGGAACTCGCTGAACGACTTGGTGCGGAAATTGTTACCCTTGCCGGACACGAC ATTGCAGAAACAGTAGCTGAGTACGCCCGGTTGACTGGTGTGACAAATATCGTTGTCGGGAAATCGCGTCGCCGCATGGG TTTAAGGTCTTTATTTGAAGAGGATTTTGAGGATCGTCTCATTACGCACCTTGATAACGTCGATATGCATATTATTCCCT CAAGCCAACCGCAAACTAAAAAACGTCGAATGAAAATACGTTTTAAAAGCTTTCTATCCTGGCATGATATGGCGAAAATG ATTTTACTGCTAGCATTGGCAACGGCGATTTGTGTCGGTTTAAGTGAATTCGGCATTGGTGATCAAAATGTTATTATGGT ATATATTTTATCCGTGTTAATTATTTCTCGCGTAACAAGTGGCTATGTTTATGGCGTTATGGGTTCTATCATTGGCGTTA TGTTATTTAATTTCTTTTTCACGACGCCACTTTATACGTTTAATACAATTCAAGCGGGCTATCCGGTGACGTTCGGAATT ATGCTTTTAGTTGCTCTTATTACGAGTGCGCTCACTGTCCGAATTAAAACGCAAGCTAGCCTGGCCGTTGAGCGAGAACG TCGAACCGAAGTGCTTTATGAAATCAATAAGCGGCTATTAGTTATCCGCAATTTAAAAGGAATTATCGATTTAACCAACG AATATATTTTGCATTTATTTAGCCGCTCCGTTATTTTTTATTCTGCGGATCCTGCTAAAAGTAATAAAGGGATTTTCGTA CAAGCAGAAGGAAAAGAAGATGCCAGTGCGCTTCTTAGTGCGGATGAAGAAGCTGTCGCGCATTGGGTATTTAAAAATAA AAAGCGGGCGGGTGCCGGGACGGATACGCTAATGGGGGCATTTGGTTATTATATGCCAGTGATGTCACAAGGAAAAGTGC TTGGCGTCATTGGCGTTTCTTGCTCCCCAGAAGATGGTCCACTTACACAAGATAATCGGATCTTTTTACGAATGATTAGC TCTCAAGTGGCACTAGCTTTAGAACGGCAATATTTATCCGAAGAACAACGCCAAATCGTCATCGAATCAGCAAAAGAAAA AATGAGAAGCAATTTACTTCGGGCGATTTCGCATGATTTAAGAACACCGCTAACTGGTATTGTTGGAGCAAGTTCTGCCT TACTTGAAAAAGAAACTGAGTTAGATAAAGAAACGGAACATAATTTAATTAAAGGTATTAAAGATGACTCTGGCTGGCTC ATTCGGATGGTTGAGAATTTACTTTCTGTGACGAGAATTAGTGAAGGATTGGTGAGTTTGGAACGAGCTCCAGAAGCCGT AGAAGAAATTGTTGGTGAGGCTGTCGGTCGAATCAAAAAACGTTTCGCAGACCGAACAATTCATGTCAAAGTACCGCGCG ACCTTCTTATGGTTCCGATGGATGGCACGTTAATTGAGCAAGTCCTTATTAATTTAATGGAAAATGCGTTGCGACATGGT GGATCTGATGCGGAAGTTTGGGTGAACGTGACGAAAACGAAGAAAAGTGCGATTTTTAGTGTGCGTGATAACGGAAAAGG CATTCCAGAAAATCGCTTGCCAGATTTATTTGATACTTTTGCTGTGGAAGCGAGAGAACGTTCGGATATGTCACGCGGAT TAGGGCTTGGTTTATCGATTTGTATGTCGATTATTCGAGCGCATGACGGGACTTTAGAAGCGAAAAACAACGAACATGGT GGGGCGACATTCTGGTTCACTTTGCCACTAGACGGAGGAGATGGAAAATGA Protein sequence : METNRPSPDALLVNLQEEADSSVGKLKIYFGFAAGVGKTYAMLSDAKDQLAAGVDVVAGYIEPHAREETLRMLEGIPIIP PKAINHKNIALKEFDLDEALKRKPELILVDELAHTNASGVRNKKRFQDVEELLQAGIDVYTTVNVQHIESLNDIVEGITK VAVRETIPDYVFDEADRVKLIDIEPDELLKRLEQGKIYQPARAKTAMQNFFTRENLKLLREIAMRKAADRISHEYDQTGI YPEKRASSKWLVCIGTSPSSAKLIRWTARTAEAFRAPWTALYIENEENDYMTKAEKKCLRETMELAERLGAEIVTLAGHD IAETVAEYARLTGVTNIVVGKSRRRMGLRSLFEEDFEDRLITHLDNVDMHIIPSSQPQTKKRRMKIRFKSFLSWHDMAKM ILLLALATAICVGLSEFGIGDQNVIMVYILSVLIISRVTSGYVYGVMGSIIGVMLFNFFFTTPLYTFNTIQAGYPVTFGI MLLVALITSALTVRIKTQASLAVERERRTEVLYEINKRLLVIRNLKGIIDLTNEYILHLFSRSVIFYSADPAKSNKGIFV QAEGKEDASALLSADEEAVAHWVFKNKKRAGAGTDTLMGAFGYYMPVMSQGKVLGVIGVSCSPEDGPLTQDNRIFLRMIS SQVALALERQYLSEEQRQIVIESAKEKMRSNLLRAISHDLRTPLTGIVGASSALLEKETELDKETEHNLIKGIKDDSGWL IRMVENLLSVTRISEGLVSLERAPEAVEEIVGEAVGRIKKRFADRTIHVKVPRDLLMVPMDGTLIEQVLINLMENALRHG GSDAEVWVNVTKTKKSAIFSVRDNGKGIPENRLPDLFDTFAVEARERSDMSRGLGLGLSICMSIIRAHDGTLEAKNNEHG GATFWFTLPLDGGDGK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kdpD | NP_814336.1 | sensor histidine kinase KdpD | Not tested | Not named | Protein | 1e-145 | 41 |
| ef0090 | AAM75293.1 | EF0090 | Not tested | Not named | Protein | 6e-146 | 41 |
