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Name : clpC (lin0264) Accession : NP_469609.1 Strain : Listeria innocua Clip11262 Genome accession: NC_003212 Putative virulence/resistance : Virulence Product : endopeptidase Clp ATP-binding chain C Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 273655 - 276117 bp Length : 2463 bp Strand : + Note : - DNA sequence : ATGATGTTTGGACGGTTTACGCAAAGAGCTCAGAAAGTACTCGCGTTGTCACAAGAAGAGGCGATGCGTTTGAATCATAG TAATTTAGGAACAGAACATATACTTCTAGGCCTTGTAAGAGAAGGCGAAGGAATTGCGGCGAAAGCTCTCTATGAACTTG GGATTAGTTCTGAAAAAGTGCAGCAAGAGGTGGAAGGCTTAATTGGTCATGGGGAAAAAGCTGTGACAACGATTCAATAT ACTCCTCGCGCGAAAAAAGTAATTGAACTTTCGATGGATGAGGCTAGGAAACTAGGGCATACTTACGTTGGAACAGAACA TATCTTACTTGGGCTTATTCGTGAAGGAGAGGGCGTTGCAGCTCGCGTTTTAAGTAACCTAGGTATTAGTTTAAATAAAG CGCGTCAACAAGTTTTACAGCTTCTTGGTGGCGGAGATGCTACAGGTGCTGGTCGACAAACAAATACGCAGGCGACACCA ACTTTAGATAGTTTGGCACGTGATTTAACGGTTATTGCTCGGGAAGAGAATTTGGATCCAGTGATTGGTCGTTCTAAGGA AATTCAACGTGTGATTGAGGTGCTTAGTCGTCGGACAAAAAATAACCCAGTTCTTATTGGTGAACCTGGTGTTGGTAAAA CAGCCATTGCAGAAGGTCTGGCGCAGCAAATTGTCCGCAATGAAGTACCTGAAACCTTACGCGGAAAACGTGTTATGACG CTTGATATGGGGACTGTTGTAGCAGGTACAAAATATCGTGGTGAATTTGAAGACCGTTTGAAAAAAGTAATGGATGAAAT TCGTCAAGCTGGTAATGTTATTCTATTTATTGACGAACTGCATACGTTAATTGGCGCTGGTGGGGCGGAAGGTGCGATTG ATGCATCCAATATTTTGAAGCCACCTCTAGCTCGTGGTGAATTGCAATGTATTGGTGCAACAACCTTAGATGAATATCGC AAATACATTGAAAAAGATGCAGCGCTTGAAAGACGTTTCCAACCGATTAAAGTTGATGAACCGACTGTAGAAGAGTCTAT CCAAATTTTACATGGGTTGCGTGATCGTTATGAAGCGCATCACCGAGTTGCGATTACGGATGAAGCTCTTGAGGCTGCTG TTCGTTTATCTGATCGCTATATTTCAGACCGTTTCTTACCTGATAAAGCGATTGATGTTATTGATGAATCTGGATCAAAA GTTCGTTTAAAATCTTTTACAACTCCAAAAAATGTAAAAGAAATGGAAAACAATTTATCCGAATTGAAAAAAGAAAAAGA TGCCGCTGTACAAGGGCAAGAGTTTGAAAAAGCAGCAGCATTACGTGATAAAGAACAGAAACTCAAGAAATCATTAGAAG AAACAAAAGCAAACTGGCAAGAGAAGCAAGGTCTTGATCATAGTGAAGTAACAGAAGATATTGTTGCAGAAGTAGTTGCT AGTTGGACTGGAATTCCGGTTGCTAAACTGGCTGAAACGGAAACAAACAAACTTCTTAATATGGAAAAACTTTTACATGA GCGAGTTATTGGCCAAGATGCAGCGGTAAAAGCCGTATCACTCGCTGTTCGCCGAGCTCGTGCAGGGCTTAAAGATCCGA AACGTCCGATTGGCTCCTTCATTTTCCTTGGTCCTACTGGGGTTGGGAAAACGGAACTTGCACGTGCACTTGCTGAGTCC ATGTTTGGTGATGAAGATTCAATGATTCGGATTGATATGTCCGAGTACATGGAGAAATTCTCAACTGCTCGTTTAGTTGG GGCTCCTCCAGGTTATGTTGGTTATGAAGAAGGCGGTCAACTGACAGAAAAAGTTCGTCAAAAACCTTATTCTGTAGTGC TTCTTGATGAAATTGAAAAAGCGCATCCTGATGTATTTAATATGTTGTTACAAGTGCTTGATGATGGTCGTTTAACTGAT TCTAAAGGTCGCGTGGTTGATTTTAGAAATACAGTTATTATTATGACTTCTAATATCGGTGCTCAAGAAATGAAACAAGA TAAATCCATGGGCTTTAATGTGATTGATCCACTTAAAGATCATAAAGCAATGGAACATCGTGTTTTACAAGATTTAAAAC AAGCTTTCCGCCCAGAATTTATTAACCGGATTGACGAAACAATTGTATTCCATTCTCTACAAGAAAAAGAATTGAAACAA ATTGTTACGCTTCTGACTTCTCAATTAACTAAACGCCTAGCTGAACGTGATATTCATGTGAAATTAACAGAAGGTGCAAA AGCTAAAATTGCCAAAGATGGTTATGACCCAGAATACGGGGCGCGTCCTTTGAAACGAGCAATTCAAAAAGAAGTAGAAG ATATGCTTTCTGAAGAATTACTTCGTGGCAATATCAAGGTAGGCGATAACGTTGAAATTGGTGTGAAAGACGGAAAATTA GAAGTTAGGAAAAAAGCAGCGACTAAAAAGAAAGCTGCTCCCAAAAAAGTAAAATCGAAATAA Protein sequence : MMFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQQEVEGLIGHGEKAVTTIQY TPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDATGAGRQTNTQATP TLDSLARDLTVIAREENLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMT LDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNVILFIDELHTLIGAGGAEGAIDASNILKPPLARGELQCIGATTLDEYR KYIEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYISDRFLPDKAIDVIDESGSK VRLKSFTTPKNVKEMENNLSELKKEKDAAVQGQEFEKAAALRDKEQKLKKSLEETKANWQEKQGLDHSEVTEDIVAEVVA SWTGIPVAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES MFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDEIEKAHPDVFNMLLQVLDDGRLTD SKGRVVDFRNTVIIMTSNIGAQEMKQDKSMGFNVIDPLKDHKAMEHRVLQDLKQAFRPEFINRIDETIVFHSLQEKELKQ IVTLLTSQLTKRLAERDIHVKLTEGAKAKIAKDGYDPEYGARPLKRAIQKEVEDMLSEELLRGNIKVGDNVEIGVKDGKL EVRKKAATKKKAAPKKVKSK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 58 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-96 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | NP_469609.1 | endopeptidase Clp ATP-binding chain C | VFG0079 | Protein | 0.0 | 99 |
| clpC | NP_469609.1 | endopeptidase Clp ATP-binding chain C | VFG0080 | Protein | 5e-155 | 53 |
