Gene Information

Name : lin2725 (lin2725)
Accession : NP_472054.1
Strain : Listeria innocua Clip11262
Genome accession: NC_003212
Putative virulence/resistance : Resistance
Product : hypothetical protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2744297 - 2744968 bp
Length : 672 bp
Strand : -
Note : similar to ABC transporter, ATP-binding protein

DNA sequence : 
ATGACTTTAATGATGAAAAATATTTCTAAAAATTATCAAGATGGCGAGCAAGTCATCGAAGTATTGAAAAGTGTTTCTTT
AGAAGTAGCGCAAGGAGAATTTGTTGCAATCGTCGGCCCATCTGGTGCGGGGAAAAGTACATTTTTATCAATCGCAGGCG
CTTTATTATCTCCAACAGAAGGCGAAATTGCCATTGGTGGAACGACATTAAATAACATGTCTGAAAAAGCATTAACGAAG
GTGCGACTCGACAAAGTTGGCTTTATTTTCCAAGGTGCCAACTTAATTCCTTACCTAAATGTTCGCGACCAACTACTCGT
CATTGCGGAATTATCCGGTGAAAAAGGTAGCGCTGCGAAAGAAAGAGCAGATAAATTGCTTCAAGAATTAGGCTTAACCG
CGCGCCAAAACAATTATCCAGAAAGCTTATCCGGCGGCGAAAAACAACGTGTTGCTATTGCTAGAGCGCTGATGAACGAC
CCCGATATTATTTTAGCAGACGAACCAACAGCTAGTTTAGATGCAAATCGCGGGCACAAGGTAGTTCAAATGATTGCAGA
TGAAGTAAAACAGAAAAATAAAGCTGCCATCATGGTTACACATGACGAACGAGTGTTAGATTTAGTCGATCGTGTCATTC
GAATTGAAGATGGCTATTTAAAAGCAGAATAA

Protein sequence : 
MTLMMKNISKNYQDGEQVIEVLKSVSLEVAQGEFVAIVGPSGAGKSTFLSIAGALLSPTEGEIAIGGTTLNNMSEKALTK
VRLDKVGFIFQGANLIPYLNVRDQLLVIAELSGEKGSAAKERADKLLQELGLTARQNNYPESLSGGEKQRVAIARALMND
PDIILADEPTASLDANRGHKVVQMIADEVKQKNKAAIMVTHDERVLDLVDRVIRIEDGYLKAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SARLGA251_00480 YP_005754062.1 ABC-type transport system ATPase Not tested Type-XI SCCmec Protein 3e-43 46
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 9e-51 45
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-37 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lin2725 NP_472054.1 hypothetical protein NC_012469.1.7686878. Protein 1e-39 44
lin2725 NP_472054.1 hypothetical protein CP001581.1.gene798.p Protein 2e-37 43
lin2725 NP_472054.1 hypothetical protein CP001581.1.gene598.p Protein 3e-36 42
lin2725 NP_472054.1 hypothetical protein NC_012469.1.7685735. Protein 2e-33 41