Gene Information

Name : lin2524 (lin2524)
Accession : NP_471854.1
Strain : Listeria innocua Clip11262
Genome accession: NC_003212
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 2546239 - 2547249 bp
Length : 1011 bp
Strand : -
Note : similar to Bacillus subtilis ferrichrome ABC transporter (permease) FhuG

DNA sequence : 
ATGACAACTGTGAAGGCGCATGATCCGCGGCGAAAACGTAGACGGATAACTTTTATTGTAGTAATCGTTTTACTTATTTT
AGCTTTTTTCTACGGGCTGACTACTGGGTCCGTGAAAGTTACATATAGTGACGCTTGGCAAACTTTGACTGGCGGCGGGA
GTGACCTTGCGAATCAATTGATATGGAATTTGCGTTTGCCACGACTATTGATTGCATTCTTAGTAGGTGCTGCACTTGCA
ATAGCAGGTTGCTTGCTCCAAGGCGTGATGCGAAATCCATTAGCTGACCCAGGTGTAATCGGGGTTTCAGCGGGCGGCGG
ATTTGTAGCAATTTTAATGACGTTAGCATTTCCTGCTTTGGCTTCTTTTGTTCCAATTGGCGCATTTTTAGGGGCTTTTG
GTACGGCAATTTTAATTTATTTATTAGCGTGGGATCGTGGCGTTTCTCCATTACGTGTCATTTTATCTGGTGTTGCTATT
AATGCTTTTATTGGCGCAATGACTTCTGGAGTTATGGTGCTTTATAGTAACCGGGTTCAAAGTGTTATTTCTTGGATGAC
AGGAACGCTTTCTGGGAAAAGTTGGTATCACTTGGATATGATTTGGCCTTATATGTTGGTTGGTTTTGTTTTAAGTGGTT
TTGCTATTCGCTCTTCCAATGTGTTGCTACTTGGGGACGATGCAGCAAAATTACTCGGTTTTTCCGTCGAACGACATCGT
TTTTTCATTATCATGTTAGCGGCATTTTTAAGTGGGGTCGCAGTGAGTGTAGCTGGATTAATTGGCTTTGTTGGGCTGGT
TGTGCCACATATTTTCCGTTTGATTATCGGCAATGACTACAAATATTTACTGCCATTATCTGCCTTAGGTGGCGCACTAT
TAGTTGGTTTTGCTGATACAGCGGCTAGAAGTTGGTTTGGGTCGATTGAGCTTCCAGTTGGGATTTTGCTTGCGATGATT
GGCGCACCATTCTTCTTATTCCTACTTCAAAGAGGGAGGGTTGCTTCATGA

Protein sequence : 
MTTVKAHDPRRKRRRITFIVVIVLLILAFFYGLTTGSVKVTYSDAWQTLTGGGSDLANQLIWNLRLPRLLIAFLVGAALA
IAGCLLQGVMRNPLADPGVIGVSAGGGFVAILMTLAFPALASFVPIGAFLGAFGTAILIYLLAWDRGVSPLRVILSGVAI
NAFIGAMTSGVMVLYSNRVQSVISWMTGTLSGKSWYHLDMIWPYMLVGFVLSGFAIRSSNVLLLGDDAAKLLGFSVERHR
FFIIMLAAFLSGVAVSVAGLIGFVGLVVPHIFRLIIGNDYKYLLPLSALGGALLVGFADTAARSWFGSIELPVGILLAMI
GAPFFLFLLQRGRVAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecD AAL08452.1 FecD Virulence SRL Protein 1e-25 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lin2524 NP_471854.1 hypothetical protein BAC0163 Protein 9e-26 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lin2524 NP_471854.1 hypothetical protein VFG1043 Protein 8e-26 43