|
Name : lin2231 (lin2231) Accession : NP_471564.1 Strain : Listeria innocua Clip11262 Genome accession: NC_003212 Putative virulence/resistance : Unknown Product : hypothetical protein Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG0366 EC number : - Position : 2253346 - 2255121 bp Length : 1776 bp Strand : - Note : similar to maltogenic amylase DNA sequence : ATGGAAAAAGCAGGGATTTATCATCAACCAGCGAGTAGCTATGCTTATAGTTATGACGCTAAAACACTACATATTAGAAT TAGAACGAAACGCTTAGATATTAGCAAAGTTACTTTAATTGCTGCCGACCCTTACTTATGGAAAAACGAAAAATGGCAAA GTGAATCATATTCGATGCGCAAAATTGCAGAGACCGAAGAGCATGATTATTGGTTTTTCGCGATAACACCAGAACATAGA CGCCTTCAATACGGCTTTTTACTAACAGATACAGAAGGAGAAACAACATTTTACGGCGGACGTGGTTTTTTTGAGCCGAC TGAAGCGAATTTAGCTACGATGGATTATTACTTTAAATTTCCGTTTATCCATGCAGTAGATACATTTGAAGCGCCTGAAT GGGTTGGAAATACCATTTGGTACCAGATTTTCCCAGAACGTTTTGCAAATGGTAACCCGGCTATTTCCCCTGAAAATGCC TTGCCGTGGGGAAGTAAAGATCCGAATACAACAGACTTTTTCGGTGGAGATCTTGAAGGAATCATTCAGCACTTAGATTA TTTAGCAGAGCTTGGCATCAATGGGGTATATTTAACGCCTGTTTTTGAAGCACCGACCAACCATAAATACGACACAATTG ATTATAAAAAGATTGATCCGCATTTTGGTGATAAAGAAACCTTTAGAAAATTAGTTCAAGAAGCGCATAAACGCGGTATT CGTATTATGCTTGATGCAGTGTTTAATCATATTGGGGACACTTCTCTAGAGTGGCAAGATGTTGTCGAGAAAGAAGAAAA ATCCGCATATCGCGACTGGTTCCATATCCATAGTTTCCCTGTTCGTCAAAATGAAAATGGCAATATTGAAGGAGAACCAA CACTTTCTTACGATACATTTGCTTTCACGACGCATATGCCAAAATTAAATACGGCTAACCCAGAAGTTCAGAAGTATCTA TTGGATATTGCAACTTACTGGATTCGCGAATTTGACATTGATGGTTGGCGCTTAGACGTTGCTAATGAAGTTGATCATGC TTTCTGGAAAGAGTTCAAAAAAGCGGTCCAAGCGGAAAAAGAAGATATTTATATTCTTGGTGAAATTTGGCATGATTCGT GGATTTGGTTGCTTGGAGATGAATTCCACGCCGTAATGAACTATCCATTTACACAAACGATTATTGAGAACTTTATTGAA GAAAAAATCACTCCAGAGCAAATGGTTTCTGGTATTAATGAACAATATATGCGCTATCCTAATCAAGTGAATGAAGTAAT GTTCAATATGCTTGATAGCCATGATACAGCGCGCATTTTAACACGTGCTAATAATGATGAGGATAAGGTGAAACAAGCAC TTGCCTTCATGTTCGCACACACTGGTTCGCCGTGTATTTATTACGGAACTGAAATCGGTATGGACGGCGGAAATGACCCA GGTTGTCGTAAATGTATGGAATGGGACGAAACAAAACAAAATCAAGATATGCTAGCATTTACGAAACAATTAATTGCGCT AAGAAAAGATAACCAAGCAATTATTACATCCGGCGAATTAAATTGGCTAGGTGCAAGTAGCGAAACGGGCATTACAGCAT TTTCTAAAGAATTAAATGGTGAAAAACTGCATTTCCTTTTCAACCAAGCAAAAGAAGATAAGGATTTCACAATTTCATTT GAGAATACAGCGACAGATATTTGGAATAACCGAGCTGTAACAGAAAATCTTGTCGTCCCAGCAAAAGGATTTCTTGTTAT TAAAGAAAACAGCTAA Protein sequence : MEKAGIYHQPASSYAYSYDAKTLHIRIRTKRLDISKVTLIAADPYLWKNEKWQSESYSMRKIAETEEHDYWFFAITPEHR RLQYGFLLTDTEGETTFYGGRGFFEPTEANLATMDYYFKFPFIHAVDTFEAPEWVGNTIWYQIFPERFANGNPAISPENA LPWGSKDPNTTDFFGGDLEGIIQHLDYLAELGINGVYLTPVFEAPTNHKYDTIDYKKIDPHFGDKETFRKLVQEAHKRGI RIMLDAVFNHIGDTSLEWQDVVEKEEKSAYRDWFHIHSFPVRQNENGNIEGEPTLSYDTFAFTTHMPKLNTANPEVQKYL LDIATYWIREFDIDGWRLDVANEVDHAFWKEFKKAVQAEKEDIYILGEIWHDSWIWLLGDEFHAVMNYPFTQTIIENFIE EKITPEQMVSGINEQYMRYPNQVNEVMFNMLDSHDTARILTRANNDEDKVKQALAFMFAHTGSPCIYYGTEIGMDGGNDP GCRKCMEWDETKQNQDMLAFTKQLIALRKDNQAIITSGELNWLGASSETGITAFSKELNGEKLHFLFNQAKEDKDFTISF ENTATDIWNNRAVTENLVVPAKGFLVIKENS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SPN23F_09660 | YP_002510949.1 | alpha-amylase | Not tested | PPI-1 | Protein | 4e-146 | 51 |
