|
Name : lin2205 (lin2205) Accession : NP_471538.1 Strain : Listeria innocua Clip11262 Genome accession: NC_003212 Putative virulence/resistance : Unknown Product : pyridoxal biosynthesis lyase PdxS Function : - COG functional category : H : Coenzyme transport and metabolism COG ID : COG0214 EC number : - Position : 2226138 - 2227025 bp Length : 888 bp Strand : + Note : similar to a protein required for pyridoxine synthesis; with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate DNA sequence : ATGGAGAAAAAAGTTGGTACAGACCGTGTAAAACGTGGAATGGCGCAAATGCAAAAAGGCGGCGTCATTATGGATGTTGT AAATGCTGAACAGGCAAAAATCGCTGAAGAAGCTGGTGCAGTAGCGGTTATGGCACTTGAACGTGTTCCTTCTGATATTC GTGCAGCTGGTGGCGTCGCTCGTATGGCTGATCCTCGTATTGTGGAAGAAGTAATGAATGCTGTTTCTATCCCTGTTATG GCAAAAGCTCGAATTGGTCATATTACAGAAGCACGTGTCCTCGAAGCAATGGGCGTCGACTATATTGATGAAAGCGAAGT ATTAACACCAGCCGATGATGAATTCCATTTACTTAAATCAGACTTCACAGTTCCTTTCGTATGTGGTTGCCGTGATATAG GTGAAGCGCTCCGCCGTATTGGTGAAGGTGCTGCCATGCTCCGTACAAAAGGGGAACCCGGAACAGGAAATATCGTCGAA GCAGTCCGTCATATGCGCCAAGTAAATGGCCAAATCCGCCAAATTGCAAGCATGACAGATGATGAATTAATGGTTGCCGC TAAAAATTTCGGTGCTCCATATGAACTTGTAAAAGAAATTAAAACGCTAGGTAAACTTCCGGTCGTTAACTTTGCCGCTG GTGGTGTTGCGACTCCAGCTGATGCAGCTTTAATGATGGAACTTGGAGCAGACGGTGTTTTCGTTGGATCAGGTATTTTC AAATCCGATAACCCTGCCAAATTTGCCAGTGCGATTGTTCAAGCTACTACCTACTATACAGACTATGAATTAATCGGAAA ACTGTCCAAAGAGCTAGGTTCCCCGATGAAAGGAATCGAAATGTCTCGTCTTAATCCAGAAGACAGAATGCAAGATCGGA GTTTTTAA Protein sequence : MEKKVGTDRVKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMADPRIVEEVMNAVSIPVM AKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVE AVRHMRQVNGQIRQIASMTDDELMVAAKNFGAPYELVKEIKTLGKLPVVNFAAGGVATPADAALMMELGADGVFVGSGIF KSDNPAKFASAIVQATTYYTDYELIGKLSKELGSPMKGIEMSRLNPEDRMQDRSF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pdxS | YP_005137204.1 | pyridoxine biosynthesis protein | Not tested | Not named | Protein | 3e-81 | 64 |
| DIP0227 | NP_938620.1 | pyridoxal biosynthesis lyase PdxS | Not tested | Not named | Protein | 4e-81 | 63 |
| pdxS | YP_005141805.1 | pyridoxine biosynthesis protein | Not tested | Not named | Protein | 5e-81 | 63 |
