Gene Information

Name : lin2074 (lin2074)
Accession : NP_471408.1
Strain : Listeria innocua Clip11262
Genome accession: NC_003212
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2089079 - 2089903 bp
Length : 825 bp
Strand : +
Note : similar to ferrichrome ABC transporter (ATP-binding protein)

DNA sequence : 
ATGAAAGACCTTCATACAGATAACTTACAAATTTCATACGACAAACGAATCATTGTTGATGGTTTAGATATAGCCATTCC
TGCTAATAAAATAACTGCCTTAGTTGGGGCAAATGGTTCCGGGAAATCAACTATTTTAAAGACGATGTCCCGCTTGATGA
AACCTAGCAAAGGCGCTGTTTATTTAGACGGCAAGAAAATTCATAATGAACCGACACGAGAAATTGCCAAACAATTAGCT
ATTTTGCCACAAAATCCTTCAGCACCTGATGGTTTGACGGTGTTTGAATTAATTTCTTATGGCCGCTCTCCGCATCAAAG
CAGTTTTAAATCAATTACCGCAAAAGATCGGGAAATTATTTTCTGGTCATTGCGTGTAACGAATTTAACTGAATTTGCGG
ACCGACCGATTGACAGTTTATCAGGCGGACAACGCCAACGTGCTTGGATAGCAATGTCGCTCGCGCAAGAAACAGACGTA
CTATTCCTCGATGAACCGACAACCTTTTTAGACATGACTCACCAACTAGACGTCCTTAACCTACTCAAACAATTAAATCA
ATCAGAAAACCGTACAATCGTGATGGTTGTTCATGATTTAAATCACGCATCTCGTTACGCTCATCATATGATTGCTATTA
AAGAAGGAAAAGTAGTTGCAGAAGGTTCGCCAGTTAACGTAATGACTGAAGAAACGTTAGAAGACGTATTTAATATTAAA
GCCGATATTTTAATTGACCCACGCAGCGGTGTCCCTCTTTGTCTCCCATACGAAACTTGCAACGGGTGCGAAATTGTAAA
GGAGCTTGATTCCATTGCCAAATGA

Protein sequence : 
MKDLHTDNLQISYDKRIIVDGLDIAIPANKITALVGANGSGKSTILKTMSRLMKPSKGAVYLDGKKIHNEPTREIAKQLA
ILPQNPSAPDGLTVFELISYGRSPHQSSFKSITAKDREIIFWSLRVTNLTEFADRPIDSLSGGQRQRAWIAMSLAQETDV
LFLDEPTTFLDMTHQLDVLNLLKQLNQSENRTIVMVVHDLNHASRYAHHMIAIKEGKVVAEGSPVNVMTEETLEDVFNIK
ADILIDPRSGVPLCLPYETCNGCEIVKELDSIAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 7e-58 48
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 7e-58 48
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 8e-55 46
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-50 45
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-50 45
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-50 45
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-50 45
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 4e-52 44
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 5e-56 43
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-51 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-51 41
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-51 41
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-51 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lin2074 NP_471408.1 hypothetical protein BAC0164 Protein 3e-52 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lin2074 NP_471408.1 hypothetical protein VFG0925 Protein 4e-57 46
lin2074 NP_471408.1 hypothetical protein VFG1042 Protein 2e-52 44