Gene Information

Name : lin1963 (lin1963)
Accession : NP_471297.1
Strain : Listeria innocua Clip11262
Genome accession: NC_003212
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 1979996 - 1980718 bp
Length : 723 bp
Strand : -
Note : similar to metal cations ABC transporter, ATP-binding proteins

DNA sequence : 
ATGAACATTCAAGGTTTAACGATAGCATATAAACAAAAAGTGGCGATTGATGATGTCACTCTTCAAATAGCAACAGGAAA
ATTAACTGGGATTGTCGGTCCCAATGGTGCTGGTAAATCTACATTATTAAAAGGAATGATGGGATTAGTTCCACGCGAAA
AAGGCCAAGTAACATTAGATAATAAGCCTCTCACTTATTGGAGAAAGAAAATCGCTTATGTCCCGCAGCGTAGTGAAGTA
GATTTAACTTTTCCAATCACTGTTTTTGATATGGTACTTCTTGGTACTTATCCGGCCCTGGGATTAATAAAACGCCCTGG
TAAAAAAGAAAAACAGCTGGCATTTGATGCTTTAGAACAAGTGGAGATGACGGCATTTAGTAAAAGACAAATCGGCGAAC
TGTCAGGTGGTCAATTGCAGCGTGTGTTTATTGCTCGTGCCTTAGCGCAACATGCGGAAATCTTCTTTTTAGATGAACCA
TTTGCTGGCATTGATATGGCTAGCGAAGCGCTTATTATGAAATTGTTAAAAAAGCTAAGAGATAACGGAAAAACTATCGT
AGTCGTCCACCATGATTTTCATAAAGTAGCTGCTTACTTTGATGACATTATTTTACTCAATAAAAAATTAGTGGCACACG
GTCCGGTAGAACAAACATTTACAGAAGAAAAAATTCAATTTGCTTATGGTGACGCACCGGTAGCATTTGCGGCGGGGGTG
TAG

Protein sequence : 
MNIQGLTIAYKQKVAIDDVTLQIATGKLTGIVGPNGAGKSTLLKGMMGLVPREKGQVTLDNKPLTYWRKKIAYVPQRSEV
DLTFPITVFDMVLLGTYPALGLIKRPGKKEKQLAFDALEQVEMTAFSKRQIGELSGGQLQRVFIARALAQHAEIFFLDEP
FAGIDMASEALIMKLLKKLRDNGKTIVVVHHDFHKVAAYFDDIILLNKKLVAHGPVEQTFTEEKIQFAYGDAPVAFAAGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 1e-54 51
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 1e-54 51
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-43 41
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 7e-43 41
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 5e-43 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lin1963 NP_471297.1 hypothetical protein BAC0400 Protein 5e-60 55
lin1963 NP_471297.1 hypothetical protein BAC0440 Protein 8e-46 42
lin1963 NP_471297.1 hypothetical protein BAC0350 Protein 3e-43 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lin1963 NP_471297.1 hypothetical protein VFG0526 Protein 3e-43 41