Gene Information

Name : lin1787 (lin1787)
Accession : NP_471123.1
Strain : Listeria innocua Clip11262
Genome accession: NC_003212
Putative virulence/resistance : Resistance
Product : cystathionine beta-lyase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0626
EC number : 4.4.1.8
Position : 1785371 - 1786543 bp
Length : 1173 bp
Strand : -
Note : similar to cystathionine beta-lyase; catalyzes the formation of L-homocysteine from cystathionine

DNA sequence : 
GTGGCTAAGGATTATGGGCAAGATACAGCTGTAATTAAAGCTAGTTTAGGAATCGATAAAGAAACAGGTGCACTTAATAC
GCCCATTCATTTATCGTCTACATTTCATCAACATGATTTTGATAATTACCATACTTATGATTATGCAAGAAGTGGCAATC
CGACGAGAGAAAAAGTGGAGCAAGCGATTGCCGAGTTAGAAAGTGGCACGAACGGTTTTGCTTTTGCAAGTGGTATGGCT
GCTGTTTCTGCGGCACTTTTCACACTATCTAAAGGGGATCATTTTATTATTTCAAAAGATGTGTATGGTGGAACTTTTCG
TTTGGTTGAGCAAGTGTTGCCGAGGTTTGGGATTACGCATACTTTTGTTGATACGACAAATATTGATGAAGTTGCGAAGG
CATTTCAAGCGAATACTAAGTTGGTTTACTTGGAAACACCATCCAATCCGCTATTACATGTGACGGACATTCGGACTGTT
TCTAAACTTGCGAGAGCGAATGGCTGCCATACGTTTGTTGACAATACTTTTTTAACACCACTTATTCAAAAACCGTTAGA
GCTAGGGGCAGATTTGGTTATCCACAGTGCGACGAAATTTCTTGGCGGTCATAGTGATATTTTGGCGGGGCTTATTGTTA
CTAATAACCCGGATTTGGCTGAAGCTATTTACTTTTTGCAAAATTCAACTGGTGGGGTTCTTGGGGTGCAAGATTCTTGG
CTGTTGCTTCGTGGACTTAAAACGCTATCTGTTCGGATGAAAGCTGGGACGGAAACTGCGGAAAAAATTGCTTTGTTTTT
AAATGCGGAACCAGATGTAGTCGCGGTGCATTATCCTGGGTTACCATCCCATGCAGGCTATGAAATTCAAGTAGAACAAG
CGACGAGTGGTGGAGCTGTTTTGTCTTTTGATCTTGGTAGCGAAGAAGCAGTGCGCGAGCTCGTGAATCATTTGGAGTTA
CCGGTATTTTCCGTGAGTTTAGGTGCGGTTGAGAGTATTTTATCTTATCCTGCTAAAATGTCTCATGCTGCTGTTCCGGA
AGAGGAGCGATTAAAACAAGGAATTACTCCAGGATTATTACGTTTTTCAGCGGGGCTTGAGGATGCAGATGATTTGATTG
CTGATTTAAAACAAGCACTTTCGTTCATTAAGAAAGGAAGTGTCGCGAAATGA

Protein sequence : 
MAKDYGQDTAVIKASLGIDKETGALNTPIHLSSTFHQHDFDNYHTYDYARSGNPTREKVEQAIAELESGTNGFAFASGMA
AVSAALFTLSKGDHFIISKDVYGGTFRLVEQVLPRFGITHTFVDTTNIDEVAKAFQANTKLVYLETPSNPLLHVTDIRTV
SKLARANGCHTFVDNTFLTPLIQKPLELGADLVIHSATKFLGGHSDILAGLIVTNNPDLAEAIYFLQNSTGGVLGVQDSW
LLLRGLKTLSVRMKAGTETAEKIALFLNAEPDVVAVHYPGLPSHAGYEIQVEQATSGGAVLSFDLGSEEAVRELVNHLEL
PVFSVSLGAVESILSYPAKMSHAAVPEEERLKQGITPGLLRFSAGLEDADDLIADLKQALSFIKKGSVAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 2e-76 48
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 3e-75 47
metB YP_281510.1 cystathionine beta-lyase Not tested Not named Protein 6e-76 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lin1787 NP_471123.1 cystathionine beta-lyase BAC0207 Protein 4e-55 44