Gene Information

Name : lisR (lin1414)
Accession : NP_470750.1
Strain : Listeria innocua Clip11262
Genome accession: NC_003212
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1409425 - 1410105 bp
Length : 681 bp
Strand : +
Note : -

DNA sequence :
ATGAATAGAATATTAATCGTAGAAGATGAAAAAAACTTAGCACGCTTTATTGAACTAGAATTACAACACGAAAATTATGA
AACTGCTGTTGCTAATGATGGACGTGCTGGGCTAGAACTCGCACTAAATGAAGAATGGGATGCTATTTTACTAGACTTAA
TGTTACCACATTTAAACGGGGTAGAGGTTTGTCGTCGTGTACGCCAAGTGAAACAAACACCCATCATTATGATAACTGCG
CGAGACTCTGTGATTGATCGCGTATCTGGACTTGACCACGGAGCAGATGATTATATCGTTAAGCCATTTGCAATTGAAGA
ACTACTTGCACGTCTGCGTTCACTATTACGCCGAGTAGAAAATGCAGAACAATCTGCTAAACAAACAACGCTACAATACC
GCAACTTAATCGTTGAAAAAGAAAATCGGATTGTAAAACGCGATGAAGAAATTATTGATTTAACAAAACGCGAGTATGAA
CTACTACTTACTTTAATGGAAAATGTCAATATTGTTCTTACTCGGGAAGTATTACTTAACAAAGTATGGGGTTATGAAAC
AGAAGTAGAAACAAATGTAGTAGATGTATATGTTCGTTACTTGCGAAATAAAATTGATCATCCTGACGAAGAAAGTTACA
TCCAAACAGTTCGCGGGACTGGGTATGTGATGCGTACATGA

Protein sequence :
MNRILIVEDEKNLARFIELELQHENYETAVANDGRAGLELALNEEWDAILLDLMLPHLNGVEVCRRVRQVKQTPIIMITA
RDSVIDRVSGLDHGADDYIVKPFAIEELLARLRSLLRRVENAEQSAKQTTLQYRNLIVEKENRIVKRDEEIIDLTKREYE
LLLTLMENVNIVLTREVLLNKVWGYETEVETNVVDVYVRYLRNKIDHPDEESYIQTVRGTGYVMRT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 3e-31 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 4e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lisR NP_470750.1 two-component response regulator HE999704.1.gene1528. Protein 3e-94 100
lisR NP_470750.1 two-component response regulator AE015929.1.gene1106. Protein 3e-47 56
lisR NP_470750.1 two-component response regulator NC_010079.5776364.p0 Protein 3e-49 55
lisR NP_470750.1 two-component response regulator NC_002952.2859858.p0 Protein 3e-49 55
lisR NP_470750.1 two-component response regulator NC_007622.3794948.p0 Protein 3e-49 55
lisR NP_470750.1 two-component response regulator NC_003923.1003417.p0 Protein 3e-49 55
lisR NP_470750.1 two-component response regulator NC_013450.8614146.p0 Protein 3e-49 55
lisR NP_470750.1 two-component response regulator NC_002951.3238224.p0 Protein 3e-49 55
lisR NP_470750.1 two-component response regulator NC_007793.3914065.p0 Protein 3e-49 55
lisR NP_470750.1 two-component response regulator NC_002758.1121390.p0 Protein 3e-49 55
lisR NP_470750.1 two-component response regulator BAC0308 Protein 2e-31 43
lisR NP_470750.1 two-component response regulator BAC0125 Protein 5e-31 42
lisR NP_470750.1 two-component response regulator NC_012469.1.7685629. Protein 7e-37 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lisR NP_470750.1 two-component response regulator VFG1390 Protein 6e-40 44
lisR NP_470750.1 two-component response regulator VFG1389 Protein 5e-32 43
lisR NP_470750.1 two-component response regulator VFG1563 Protein 2e-31 41
lisR NP_470750.1 two-component response regulator VFG1702 Protein 1e-31 41