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Name : lin1343 (lin1343) Accession : NP_470679.1 Strain : Listeria innocua Clip11262 Genome accession: NC_003212 Putative virulence/resistance : Unknown Product : hypothetical protein Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG0021 EC number : - Position : 1339426 - 1341420 bp Length : 1995 bp Strand : + Note : highly similar to transketolase DNA sequence : TTGTTCGATAACACAGATAGTTTAGCAGTAAATACAATTCGTACATTATCAATTGATGCAATTCAAAAAGCAAATTCTGG TCATCCGGGATTACCAATGGGAGCGGCTCCAATGGCTTATGCACTTTGGTCTCGCGTATTAAATACAAACCCTAAAAATT CACATTGGTTTAACCGTGATCGTTTTGTACTTTCTGCTGGACACGGCTCAATGCTTTTATATAGTTTATTACATTTAAGT GGTTTCAAATTAGAAATAGAAGACCTTAAAAACTTCCGTCAATGGGAAAGTAAAACTCCAGGTCACCCAGAATATCGTTA TACTGATGGAGTAGATGCAACTACTGGTCCACTTGGTCAAGGTATTGCGATGGCTGTTGGTATGGCTATGGCAGAAAGAC ATCTTGAAGCAAAATATAACAAAGATGGTTTCCCAGTTGTGGATCACTATACTTATGCGCTATGTGGAGATGGAGACTTA ATGGAAGGTGTTGCTTCTGAAGCGGCTTCTTACGCAGGTCACCAACAACTTGGAAGACTTGTTGTTTTATACGATTCCAA TGATATTTCTCTTGATGGCGATTTAGACAAATCTTTCTCTGAAAATGTAAAACAACGCTTTGAAGCTTATGGTTGGGAAC ATTTATTAGTTAAAGATGGCAATGATACAGCAGAAATCCTAGCTGCTATTGAAAAAGCAAAACAAAATACATCACAACCT ACAATGATTGAAGTTAAAACAGTTATTGGTTTTGGTGCTCCTAATGCAGGTACTAGTAAAGTTCATGGTGCTCCTCTAGG TGACGAAGGTATTTTAGAAGCGAAAAAAGCTTATGGTTGGAACTACGAAGAAAAATTCTTTGTTCCTGAAGAAGTTACAA CTCGCTTTAAAGAAACTATTGGAGAACGCGGTGAAAAAGCAGAAGCAGCATGGAACGAATTATTTGCTTCTTATAAAGCG AAATACCCAGAGCTTGCTAAACAATTAGAAGATAGCTTAAATAACAAGTTACCAGCTGATTGGGATGCAGATCTTCCAGT ATATGACGATTCTAAAGCACTTGCTAGCCGTGCTTCAAGTGGTGAAGTTATCAATGCATTAGCTGCGAAAATACCTACTA TTTTTGGTGGTTCAGCAGACCTTGCTGGTTCTAACAATACAACAATTAAAACAGATGGTGAATTCACTAAAAAAACACCA GCAGAAAGAAATATCTGGTTTGGTGTTCGTGAATTTGCAATGGGTGCAGCGTTAAACGGTATGGCACTACACGGCGGGTT ACAAGTATACGGAGGTACATTCTTTGTATTCTCTGACTATGTACGTGCTGCGATTCGTTTATCCGCAATCCAACATTTAC CTGTAACATATGTAATGACACATGATAGTATTGCTGTAGGGGAAGATGGTCCAACCCATGAGCCAATCGAGCAACTTGCA AGCTTACGTGCTATGCCAGGACTTTCTGTTATCCGTCCTGCTGATGGAAATGAAGTAGTAGAAGCTTGGAAACTAGCGAT TACTTCGACAGATACTCCACATGTGCTTGTTCTTACTCGTCAAGGATTACCAACTTTACCAAATTCTGCGAAATTATCTG CAGAAGGCGTTAAAAAAGGTGCTTATGTTATTTCTCCTGCTAAAGGTGAGGTTCCAGAAGCAATTATTCTTGCAAGTGGT TCTGAAGTTAATTTAGCTGTTGAAGCGCAAAAAGAACTTCAAGCTCAAGGAACAGATGTATCCGTTGTGAGCGTGCCATC ATTTGATCTATTTGCAAAACAATCAGCAGAATACAAAGAAAGCGTCTTACCAAATGCTGTTAGAAAACGTGTAGCAGTAG AGATGGGTGCTAGCTTTGGTTGGGAACGTTATGTTGGTTTAGATGGTAAAGTGATTGGAATTGACAAATTTGGTGCTTCT GCTCCAGGTGAAACAGTTATTAAAAATTATGGCTTTACTGTAGAAAACGTTGTTAATACAGTAAAATCACTTTAA Protein sequence : MFDNTDSLAVNTIRTLSIDAIQKANSGHPGLPMGAAPMAYALWSRVLNTNPKNSHWFNRDRFVLSAGHGSMLLYSLLHLS GFKLEIEDLKNFRQWESKTPGHPEYRYTDGVDATTGPLGQGIAMAVGMAMAERHLEAKYNKDGFPVVDHYTYALCGDGDL MEGVASEAASYAGHQQLGRLVVLYDSNDISLDGDLDKSFSENVKQRFEAYGWEHLLVKDGNDTAEILAAIEKAKQNTSQP TMIEVKTVIGFGAPNAGTSKVHGAPLGDEGILEAKKAYGWNYEEKFFVPEEVTTRFKETIGERGEKAEAAWNELFASYKA KYPELAKQLEDSLNNKLPADWDADLPVYDDSKALASRASSGEVINALAAKIPTIFGGSADLAGSNNTTIKTDGEFTKKTP AERNIWFGVREFAMGAALNGMALHGGLQVYGGTFFVFSDYVRAAIRLSAIQHLPVTYVMTHDSIAVGEDGPTHEPIEQLA SLRAMPGLSVIRPADGNEVVEAWKLAITSTDTPHVLVLTRQGLPTLPNSAKLSAEGVKKGAYVISPAKGEVPEAIILASG SEVNLAVEAQKELQAQGTDVSVVSVPSFDLFAKQSAEYKESVLPNAVRKRVAVEMGASFGWERYVGLDGKVIGIDKFGAS APGETVIKNYGFTVENVVNTVKSL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| APECO1_2641 | YP_859417.1 | transketolase | Not tested | Not named | Protein | 1e-150 | 49 |
| tktA | AAO17218.1 | TktA | Not tested | tcd island | Protein | 7e-146 | 49 |
