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Name : lin1338 (lin1338) Accession : NP_470674.1 Strain : Listeria innocua Clip11262 Genome accession: NC_003212 Putative virulence/resistance : Resistance Product : hypothetical protein Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG1055 EC number : - Position : 1335978 - 1337273 bp Length : 1296 bp Strand : + Note : similar to arsenic efflux pump protein DNA sequence : ATGCAGATTACTTTAGCTGTTTTAGTTTTTGCCTTAACGCTTATATTTGTTATTTGGCAACCTAGAAACTTGTCGATTGG ATGGTCCGCTTGTATTGGAGCATTACTCGCATTATTACTTGGCGTTGTCACTTTAACAGATGTTGTAACTGTAACAGGCA TCGTTTGGAATGCAACACTCGCTTTTATTGCAATTATTATTATTTCACTTATTTTAGATGAGATTGGTTTTTTCGAATGG GCAGCGTTACATATGGCAAGGTTAGCAAGAGGGAACGGATTACTCATGTTTGTACTTATTTCTATTTTGGGAGCACTAGT GGCAGCTCTTTTTGCGAATGATGGGGCAGCTTTGATTTTAACTCCAATTGTTTTGGCGATGGTGCGTGCGCTTAATTTTG ATGAGAAAAAGGTGTTTCCCTTTATCATTGCCAGTGGATTTATTGCTGATACGACGTCTTTACCACTTGTTGTAAGTAAT TTAGTGAATATTGTTTCGGCTGACTTTTTTGGCATTAGTTTTTCAAAGTACGCATTAATGATGTTGATTCCGACGCTTTT TTCGTTGGTTGCGAGTATTATTGTTCTTTATATTTATTTTAGAAAAGCGTTACCTAGAACTTATGAAATTAGTGGAATTC GTGAGCCGGCTTCTGCGCTTAAAGATAAAAAAATGTTTCGGATTTCATGGGGAATACTTATCATTCTTGTGATTGGATAT TTCTTAAGTAGCTTTTTGGACATTCCAGTGTCATTTATCGCTTTACTTGTAGCGTTTATCTTTTTGCTAGTTGGTGGAAA GAGTCATGCTGTTTCTACAAGGAAAATTTTAAAAGGGGCGCCGTGGAATATTGTGTTTTTCTCGGTTGGGATGTATGTCG TCGTATACGGTTTGCAAAACGCTGGCATTACTAAATTATTAGCAGAGGCTATTTCATATATTGCGCATTATGGGCTTTTC GTAGGTACGATTGGGATGGGCTTTATTGCCGCGATATTGTCGTCTGTAATGAATAACTTACCAACTGTTATGATTAATGC ACTTGCAATCGATCATACTCCATTTACAGGAGTGATGAAAGAAGCGTTAATCTATGCAAATGTTATCGGATCTGATTTAG GGCCTAAAATAACGCCAATCGGTTCGCTTGCAACGTTACTATGGTTACATGTATTAGCTCAAAAGGGTATAAAAATAAGC TGGGGATCTTATTTTAAAATAGGTATTGTGATTACTATTCCAGTATTGTTTATTACACTCGTCGGACTTTATATTTCACT CCTTATTTGGAGCTAA Protein sequence : MQITLAVLVFALTLIFVIWQPRNLSIGWSACIGALLALLLGVVTLTDVVTVTGIVWNATLAFIAIIIISLILDEIGFFEW AALHMARLARGNGLLMFVLISILGALVAALFANDGAALILTPIVLAMVRALNFDEKKVFPFIIASGFIADTTSLPLVVSN LVNIVSADFFGISFSKYALMMLIPTLFSLVASIIVLYIYFRKALPRTYEISGIREPASALKDKKMFRISWGILIILVIGY FLSSFLDIPVSFIALLVAFIFLLVGGKSHAVSTRKILKGAPWNIVFFSVGMYVVVYGLQNAGITKLLAEAISYIAHYGLF VGTIGMGFIAAILSSVMNNLPTVMINALAIDHTPFTGVMKEALIYANVIGSDLGPKITPIGSLATLLWLHVLAQKGIKIS WGSYFKIGIVITIPVLFITLVGLYISLLIWS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SH0109 | YP_252024.1 | arsenical pump membrane protein | Not tested | SCCmec | Protein | 8e-119 | 67 |
| arsB | YP_005754065.1 | arsenical pump membrane protein | Not tested | Type-XI SCCmec | Protein | 8e-113 | 65 |
| arsB | YP_252017.1 | arsenical pump membrane protein | Not tested | SCCmec | Protein | 4e-114 | 65 |
| arsB2 | YP_001007633.1 | arsenical pump membrane protein | Not tested | YAPI | Protein | 1e-96 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lin1338 | NP_470674.1 | hypothetical protein | BAC0574 | Protein | 8e-116 | 66 |
| lin1338 | NP_470674.1 | hypothetical protein | BAC0575 | Protein | 5e-115 | 65 |
| lin1338 | NP_470674.1 | hypothetical protein | BAC0578 | Protein | 3e-96 | 59 |
| lin1338 | NP_470674.1 | hypothetical protein | BAC0577 | Protein | 1e-96 | 59 |
| lin1338 | NP_470674.1 | hypothetical protein | BAC0576 | Protein | 3e-96 | 58 |
| lin1338 | NP_470674.1 | hypothetical protein | BAC0031 | Protein | 1e-93 | 57 |
