Gene Information

Name : lin1186 (lin1186)
Accession : NP_470523.1
Strain : Listeria innocua Clip11262
Genome accession: NC_003212
Putative virulence/resistance : Resistance
Product : hypothetical protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1195559 - 1196260 bp
Length : 702 bp
Strand : +
Note : similar to ABC transporter, ATP-binding proteins

DNA sequence : 
ATGACCTATGTAGAAATGAAGGACGTATCTAAATTCTATCAAATGGGCGAAAATGTTGTTACAGCTAATGATAAAATTAA
TTTTGGAATTAAAAAAGGGGAATTTGTAGTTATTGTTGGTCCTTCAGGTGCTGGGAAATCTACCGTATTAAATATCCTTG
GTGGAATGGACAGTGCCAGTGAAGGGCGTATCATGGTAGATGGCCAGGATATTGCTCAATATAACGCAAAACAATTAACT
AAATATCGCCGCACGGATGTCGGATTCGTTTTCCAATTTTACAATTTAGTGCCTAATTTAACTGCCAAAGAAAATGTGGA
ATTAGCAGCGCAAATAGCGCCAAATGCATTAGATGCAGAAACCGTTTTAACCCAAGTTGGCTTGAGTCATAGATTAGATA
ACTTCCCGGCTCAGTTATCTGGCGGTGAGCAGCAACGGGTTGCAATTGCTCGAGCATTAGCTAAAGCACCCAAATTGCTT
TTATGCGATGAACCAACTGGCGCCCTTGATTATGATACGGGTAAATCAGTCTTAAAATTATTACAAGAAACTTGCGAAAA
GACTGGTACAACAGTTATTGTTATCACCCACAATACAGCGATTACGCCAATTGCAGACCGAATAATTGAAATTAATAATG
CAAAAGTTCGGAGCATCAAAGAAAATACGGAACCAATGTCCATTGATGATTTAGAATGGTAG

Protein sequence : 
MTYVEMKDVSKFYQMGENVVTANDKINFGIKKGEFVVIVGPSGAGKSTVLNILGGMDSASEGRIMVDGQDIAQYNAKQLT
KYRRTDVGFVFQFYNLVPNLTAKENVELAAQIAPNALDAETVLTQVGLSHRLDNFPAQLSGGEQQRVAIARALAKAPKLL
LCDEPTGALDYDTGKSVLKLLQETCEKTGTTVIVITHNTAITPIADRIIEINNAKVRSIKENTEPMSIDDLEW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-28 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-28 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-28 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lin1186 NP_470523.1 hypothetical protein NC_012469.1.7685735. Protein 8e-66 64
lin1186 NP_470523.1 hypothetical protein CP001581.1.gene798.p Protein 3e-36 44
lin1186 NP_470523.1 hypothetical protein CP001581.1.gene598.p Protein 8e-38 42
lin1186 NP_470523.1 hypothetical protein NC_008702.1.4606598. Protein 3e-29 41
lin1186 NP_470523.1 hypothetical protein NC_012469.1.7686878. Protein 2e-30 41