|
Name : clpC (lmo0232) Accession : NP_463763.1 Strain : Listeria monocytogenes EGD-e Genome accession: NC_003210 Putative virulence/resistance : Virulence Product : endopeptidase Clp ATP-binding chain C Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 250592 - 253054 bp Length : 2463 bp Strand : + Note : - DNA sequence : ATGATGTTTGGACGATTTACGCAAAGAGCTCAGAAAGTACTCGCGTTGTCACAAGAAGAGGCGATGCGTTTGAATCATAG TAATTTAGGAACAGAACATATTTTATTAGGGCTTGTAAGAGAAGGCGAAGGAATTGCGGCGAAAGCTCTCTATGAACTGG GAATTAGTTCTGAAAAAGTGCAGCAAGAGGTAGAGGGATTAATTGGGCATGGGGAAAAAGCTGTGACGACGATCCAATAT ACACCTCGTGCGAAAAAAGTAATTGAACTTTCCATGGATGAGGCTCGTAAATTAGGCCATACTTACGTTGGGACAGAACA TATCTTACTTGGGCTTATTCGTGAAGGCGAAGGAGTTGCGGCACGCGTTTTAAGTAATCTTGGTATTAGTTTGAATAAAG CTCGGCAGCAAGTTCTACAGCTCTTAGGCGGCGGTGATGCTACTGGGGCGGGGAGACAAACAAATACGCAAGCTACACCG ACTTTAGATAGTTTGGCACGTGACTTAACGGTTATTGCTCGGGAAGATAATTTGGATCCGGTTATTGGTCGTTCTAAAGA AATCCAACGTGTGATTGAAGTACTTAGTCGCCGGACGAAAAATAACCCGGTACTCATTGGGGAACCTGGTGTCGGTAAAA CAGCGATTGCTGAAGGCTTAGCGCAACAAATTGTTCGTAATGAAGTACCTGAGACCTTACGTGGAAAACGTGTAATGACA TTGGATATGGGAACTGTTGTGGCAGGTACAAAATATCGTGGTGAATTCGAAGACCGTTTGAAGAAAGTAATGGATGAAAT TCGCCAAGCTGGTAATGTTATTCTATTTATTGATGAGTTGCATACTTTAATTGGTGCTGGTGGGGCGGAAGGTGCGATTG ATGCATCGAATATCTTGAAGCCACCTCTAGCTCGTGGAGAGTTGCAATGTATTGGGGCAACAACGCTGGACGAGTACCGT AAATATATTGAAAAAGATGCTGCGCTTGAGAGACGTTTCCAACCGATTAAAGTAGACGAACCAACTGTAGAAGAATCTAT TCAAATTTTACATGGATTGCGTGATCGTTATGAAGCGCATCACCGAGTTGCAATTACGGATGAAGCACTTGAGGCCGCTG TTCGTTTATCTGATCGCTATATTTCAGACCGTTTCTTACCTGATAAAGCGATTGATGTTATCGATGAATCTGGTTCTAAA GTACGTTTGAAATCTTTTACAACGCCAAAAAATGTAAAAGAAATGGAAAATAATTTATCCGATTTGAAAAAAGAAAAAGA TGCGGCTGTTCAAGGTCAAGAATTTGAAAAAGCAGCGTCATTACGTGATAAAGAACAAAAACTCAAAAAATCATTAGAAG AAACTAAAGCGAATTGGCAAGAAAAACAAGGGCTTGACCATAGTGAAGTAACAGAAGATATTGTCGCTGAAGTGGTTGCT AGTTGGACTGGGATTCCAGTTGCGAAACTTGCGGAAACAGAGACAAATAAACTGTTAAATATGGAAAAACTTTTACATGA ACGTGTGATTGGACAAGATGCAGCGGTTAAAGCTGTATCGCTAGCTGTACGTCGAGCTCGTGCAGGCCTTAAAGATCCGA AACGTCCGATTGGTTCCTTTATTTTCCTTGGACCTACTGGTGTTGGGAAAACAGAACTTGCGCGTGCACTTGCTGAGTCG ATGTTTGGCGATGAGGATTCGATGATTCGGATTGATATGTCTGAGTACATGGAGAAATTTTCAACTGCTCGTTTAGTTGG GGCTCCTCCAGGTTATGTAGGATACGAAGAAGGTGGACAGCTGACAGAAAAAGTTCGGCAAAAACCTTATTCAGTAGTCC TTTTAGATGAAATTGAAAAAGCACATCCGGATGTATTTAATATGTTGCTACAAGTACTGGATGATGGACGTTTGACTGAT TCTAAAGGGCGAGTAGTTGATTTTAGAAATACAGTTATCATTATGACTTCCAATATTGGAGCTCAAGAAATGAAACAAGA TAAATCAATGGGCTTTAATGTTACTGATCCACTTAAAGACCATAAAGCGATGGAGCACCGCGTTTTACAAGATTTAAAAC AGGCGTTCCGACCAGAATTTATCAACCGAATTGATGAAACAATTGTATTCCATTCGCTGCAAGAAAAAGAATTGAAACAA ATTGTTACTTTACTAACTGCTCAATTAACAAAACGCTTAGCCGAACGCGATATTCACGTGAAATTAACTGAAGGTGCGAA ATCCAAAATCGCTAAAGATGGCTACGATCCAGAGTACGGAGCTCGTCCTTTAAAACGGGCTATTCAAAAAGAAGTGGAAG ACATGCTTTCTGAAGAATTGCTTCGTGGTAACATTAAAGTAGGCGATTACGTTGAAATTGGTGTGAAAGATGGCAAGTTA GAGGTTAGAAAAAAAGATGCTCCTAAAAAGAAAACAACCTCTAAAAAAGTAAAAGCTAAATAA Protein sequence : MMFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQQEVEGLIGHGEKAVTTIQY TPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDATGAGRQTNTQATP TLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMT LDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNVILFIDELHTLIGAGGAEGAIDASNILKPPLARGELQCIGATTLDEYR KYIEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYISDRFLPDKAIDVIDESGSK VRLKSFTTPKNVKEMENNLSDLKKEKDAAVQGQEFEKAASLRDKEQKLKKSLEETKANWQEKQGLDHSEVTEDIVAEVVA SWTGIPVAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES MFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDEIEKAHPDVFNMLLQVLDDGRLTD SKGRVVDFRNTVIIMTSNIGAQEMKQDKSMGFNVTDPLKDHKAMEHRVLQDLKQAFRPEFINRIDETIVFHSLQEKELKQ IVTLLTAQLTKRLAERDIHVKLTEGAKSKIAKDGYDPEYGARPLKRAIQKEVEDMLSEELLRGNIKVGDYVEIGVKDGKL EVRKKDAPKKKTTSKKVKAK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 58 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 9e-97 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | NP_463763.1 | endopeptidase Clp ATP-binding chain C | VFG0079 | Protein | 0.0 | 100 |
| clpC | NP_463763.1 | endopeptidase Clp ATP-binding chain C | VFG0080 | Protein | 1e-155 | 53 |
