Gene Information

Name : lmo1223 (lmo1223)
Accession : NP_464748.1
Strain : Listeria monocytogenes EGD-e
Genome accession: NC_003210
Putative virulence/resistance : Resistance
Product : hypothetical protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1244669 - 1245370 bp
Length : 702 bp
Strand : +
Note : similar to ABC transporter, ATP-binding proteins

DNA sequence : 
ATGACCTATGTAGAAATGAAAGATGTATCTAAATACTATCAAATGGGCGAGAACGTTGTCACTGCTAATGATAAAATCAC
TTTCGGGATAAAAAAGGGTGAATTTGTTGTTATAGTTGGGCCTTCTGGGGCCGGAAAATCCACAGTATTAAACATACTTG
GTGGAATGGATAGTGCAAGTGAAGGCAAAATTATGGTAGATGGGCAGGATATTGCTCAATATAATGCAAAACAATTAACC
AAATATCGGCGAACCGATGTCGGTTTTGTATTCCAATTTTACAATTTGGTACCTAATTTGACTGCTAAAGAGAACGTAGA
ATTAGCTGCCCAAATTGCGCCAAATGCACTAGATGCAGAAACTGTTTTAACCCAAGTTGGATTAAGTCACAGATTAGACA
ATTTTCCAGCGCAATTATCTGGTGGGGAACAGCAACGTGTCGCTATAGCACGTGCACTTGCTAAAGCTCCTAAACTGTTA
CTGTGTGATGAGCCAACCGGTGCACTTGATTATGATACCGGCAAATCAGTCTTAAAATTATTACAAGAAACTTGCCGTAA
CACGGGGACAACCGTTATTGTTATTACCCATAACACGGCGATTACGCCAATTGCTGATCGAATTATTGAAATTAATAATG
CAAAAGTTCGTAGCATCAAAGAAAATCCAGAACCAATGTCCATAGATGATTTAGAATGGTAG

Protein sequence : 
MTYVEMKDVSKYYQMGENVVTANDKITFGIKKGEFVVIVGPSGAGKSTVLNILGGMDSASEGKIMVDGQDIAQYNAKQLT
KYRRTDVGFVFQFYNLVPNLTAKENVELAAQIAPNALDAETVLTQVGLSHRLDNFPAQLSGGEQQRVAIARALAKAPKLL
LCDEPTGALDYDTGKSVLKLLQETCRNTGTTVIVITHNTAITPIADRIIEINNAKVRSIKENPEPMSIDDLEW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-28 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-28 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-28 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lmo1223 NP_464748.1 hypothetical protein NC_012469.1.7685735. Protein 9e-67 64
lmo1223 NP_464748.1 hypothetical protein CP001581.1.gene798.p Protein 5e-37 44
lmo1223 NP_464748.1 hypothetical protein CP001581.1.gene598.p Protein 2e-38 42
lmo1223 NP_464748.1 hypothetical protein NC_008702.1.4606598. Protein 6e-29 41