Gene Information

Name : fimC
Accession : NP_455134.1
Strain : Salmonella enterica CT18
Genome accession: NC_003198
Putative virulence/resistance : Virulence
Product : fimbrial chaperone protein
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 597283 - 597975 bp
Length : 693 bp
Strand : +
Note : Similar to Salmonella typhi FimC gene fimC TR:Q56085 (EMBL:X74602) (237 aa) fasta scores: E(): 0, 100.0% id in 237 aa, and to Salmonella typhimurium chaperone protein FimC precursor fimC SW:FIMC_SALTY (P37923) (230 aa) fasta scores: E(): 0, 98.3% id in 23

DNA sequence : 
ATGCTGAATAGTATAAAATTAGGATTTATTGTTCTTCTCACGTTATTTACTTCGCTGAACGTACAGGCGGCGGGGGGGAT
TGCATTAGGCGCCACGCGTGTTATTTATCCCTCGGCGGCGAAACAGACTTCTCTGGCAATCAGTAATAGCGATACTCAAG
AACGTTACCTCGTCAATTCATGGATCGAAAATAACGCTGGGCAGAAAGAAAAAACGTTTATCGTTACGCCGCCTTTATTC
GTCAGCGAGCCCAAAAGTGAAAACACGCTGCGTATTATCTACGCCGGGCAACCGCTACCCGAGGATCGGGAGTCGTTATT
CTGGATGAACGTGAAAGCCATCCCGTCGGTCGATAAAAGTCATATTGAAGGAAAAAACGTTCTGCAACTGGCGATTCTGT
CGCGCATCAAACTGTTCGTGCGTCCGGCGAATTTGCCGCAGACGCCGGAAGACGCGCCGACCTTGCTGAAATTTTCCCGT
GTCGGCAACCATCTCAAGATAACCAACCCATCTGCTTATTACCTCACGCTGGTCAATATCAGCGTGGGTGCGAAAAAGAT
TGATAACGTGATGATCGCGCCAAAAAGCGACATGCAAATTCCCTTACCGACTGGCGCGCAGGGCAGCGTGACATTTCAGA
CCGTCAATGATTACGGCGCATTGACGTCGGCGACAACAGCCAGTCTCGGTTAA

Protein sequence : 
MLNSIKLGFIVLLTLFTSLNVQAAGGIALGATRVIYPSAAKQTSLAISNSDTQERYLVNSWIENNAGQKEKTFIVTPPLF
VSEPKSENTLRIIYAGQPLPEDRESLFWMNVKAIPSVDKSHIEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSR
VGNHLKITNPSAYYLTLVNISVGAKKIDNVMIAPKSDMQIPLPTGAQGSVTFQTVNDYGALTSATTASLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 2e-48 51
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 2e-52 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fimC NP_455134.1 fimbrial chaperone protein VFG0445 Protein 3e-103 99
fimC NP_455134.1 fimbrial chaperone protein VFG1644 Protein 9e-49 51
fimC NP_455134.1 fimbrial chaperone protein VFG0911 Protein 7e-49 50
fimC NP_455134.1 fimbrial chaperone protein VFG0875 Protein 2e-53 49
fimC NP_455134.1 fimbrial chaperone protein VFG0455 Protein 5e-41 42