|
Name : STY4628 Accession : NP_458710.1 Strain : Salmonella enterica CT18 Genome accession: NC_003198 Putative virulence/resistance : Unknown Product : probable capsid portal protein Function : - COG functional category : R : General function prediction only COG ID : COG5518 EC number : - Position : 4494964 - 4496010 bp Length : 1047 bp Strand : + Note : Similar to Bacteriophage P2 presumed portal vertex protein Q SW:VPQ_BPP2 (P25480) (344 aa) fasta scores: E(): 0, 63.9% id in 319 aa and to Bacteriophage 186 capsid portal protein W TR:Q37851 (EMBL:U32222) (340 aa) fasta scores: E(): 0, 61.8% id in 340 aa. DNA sequence : TTGATGAGTGAACACGACGCCCTGACCAGCACCGCGCCAGTGCAGGAGGCCGAACAGCAGAAGAATACAACTCACGCCGA AGCGTTCAGCTTTGGCGATCCGATCCCGGTACTGGACCGCCGCGAACTGCTGGACTATGTGGAATGCGTACAGATGGACA GATGGTATGAGCCGCCAGTAAGCTTTGACGGGCTGGCGCGAACCTACCGCGCCGCTGTGCATCACAGCTCACCGATAGCG GTTAAGCGTGACATTCTCAGCAGTACGTACATCCCGCACCGCCTGCTCAGCCAGCAGGCTTTTGCCCGTTTCGTCCAAGA TTATCTGGTGTTCGGTAACGCCTATCTGGAAAAGCGCACCAACCGGCTCGGCGGCGTTCTCTCACTGGAGCCAGCACTGG CGAAGTACACACGCCGTGGCTTGGACCTCGACACCTACTGGTTTGTGCAGTACGACCTGACCACGCAGCCCTATGAATTT ACACAGGGCAACATCTTTCACCTTATGGAGCCGGATATTAACCAAGAGATTTACGGGCTGCCCGGCTATCTCTCCGCCAT TCCGTCAACCCTGCTCAACGAGTCCGCAACGCTGTTCCGCCGGAAGTATTACATCAACGGCAGCCATGCGGGGTTCATCA TGTATATGACCGATGCAGCACAGAATCAGGAGGACGTGAACAATATCCGCCAGGCAATGAAAAGCGCCAAAGGGCCGGGC AACTTCCGCAACCTGTTTATGTACTCGCCCAATGGTAAAAAGGACGGCATCCAGATCATCCCGTTGTCGGAAGTTGCGGC AAAGGATGAGTTTCTTAACATCAAGAACGTTAGCCGCGATGACATGATGGCAGCGCACCGCGTGCCACCGCAGATGATGG GCATCATCCCCAACAATACCGGCGGCTTTGGTGATGTGGAAAAGGCCAGCCGCGTGTTTGTACGAAATGAATTAATACCC CTTCAAGAAAGGATTAAAGAACTCAATGAATGGTTAGGGGATGAAGTCATTAGATTTGCGAAATATACACTCGACGACAT AAGCTAA Protein sequence : MMSEHDALTSTAPVQEAEQQKNTTHAEAFSFGDPIPVLDRRELLDYVECVQMDRWYEPPVSFDGLARTYRAAVHHSSPIA VKRDILSSTYIPHRLLSQQAFARFVQDYLVFGNAYLEKRTNRLGGVLSLEPALAKYTRRGLDLDTYWFVQYDLTTQPYEF TQGNIFHLMEPDINQEIYGLPGYLSAIPSTLLNESATLFRRKYYINGSHAGFIMYMTDAAQNQEDVNNIRQAMKSAKGPG NFRNLFMYSPNGKKDGIQIIPLSEVAAKDEFLNIKNVSRDDMMAAHRVPPQMMGIIPNNTGGFGDVEKASRVFVRNELIP LQERIKELNEWLGDEVIRFAKYTLDDIS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY4628 | NP_458710.1 | probable capsid portal protein | Not tested | SPI-7 | Protein | 9e-165 | 100 |
| t4321 | NP_807917.1 | capsid portal protein | Not tested | SPI-7 | Protein | 9e-165 | 100 |
| unnamed | ABR13463.1 | predicted capsid packaging protein | Not tested | PAGI-6 | Protein | 2e-91 | 56 |
