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Name : rci Accession : NP_458640.1 Strain : Salmonella enterica CT18 Genome accession: NC_003198 Putative virulence/resistance : Unknown Product : shufflon-specific DNA recombinase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4973 EC number : - Position : 4435339 - 4436490 bp Length : 1152 bp Strand : + Note : Previously sequenced Salmonella typhi Rci TR:O51802 (EMBL:AF000001) (383 aa) fasta scores: E(): 0, 100.0% id in 383 aa. Also similar to Escherichia coli plasmid IncI1 ColIb-P shufflon-specific DNA recombinase Rci SW:RCI2_ECOLI (P16470) (384 aa) fasta scor DNA sequence : ATGTCTCGCCCACAACGCATAAAAAAAATGTCTCTGTCGAAAGCCCTTGATAAATACTACGCCACTGTGTCTGTGCATAA ACGGGGGCATCAGCAGGAATTCTATCGTGTTAGGGTCATTCAGCGACATCCTTTGGCAGAGAAGATGATGGATGAAATCA CGACAGTGGATATTGCGTCTTACCGCGATGATCGGTTGTCTCAGGTGAATACGCGTACCGGCCGGTGTATTTCAGGAAAC ACAGTCCGGCTCGAACTCGCTTTACTGTCATCACTGTATAATCTGGCCAGCGTAGAGTGGGGAACATGCAGAACTAACCC CGTTGAAATGGTTCGTAAGCCAAAAATATCAGGAGGACGAGATCGACGTTTAACATCACAAGAGGAACGGCGCTTATCCC GCTACTTCCAGGAACAGAATCCAGCGCTTCACGCCATATTTCACCTCGCCATTGAAACAGCAATGAGACAAGGAGAGATC TTGTCACTTCGATGGGAACATATCGACCTGCAGCATGGCGTTGCCCATTTGCCAATGACAAAAAACGGCAGTTCGCGAGA TGTTCCCTTATCCCGCAAAGCGCGTCATTTGCTACAGGGAATGACGGTCGCACTTAGCGGTAATGTTTTTCACTATTCAT CATCTGGTTTTAAAAGCGCCTGGAGGGTGGCTCTGCAGCGCCTGAATATCGTCGATCTCCATTTTCACGATCTGCGTCAT GAAGCAATTAGCCGACTGTTTGAACTGGGAACACTCAACGTTATGGAAGTGGCGGCTATTTCCGGCCACCGTTCCCTGAA TATGCTCAAACGTTATACCCATCTCAGAGCATACCAGCTTGTCAGTAAACTTGACGCTCGCCGAAGACAAACACAAAAGA TTGCTCCCTATTTTGTCCCTTATCCTGCCTGTATTGAATCCGTTAATGAAGGATCAGATGGCTGTTGTGGTTTTCGTGTT CACCTACCCGATTTTGACAATCTTTCAGTGTCAGCGGCATCGAGGGAGAGTGCGCTGGAGGCTGCAGGTGTTCTGTTGCT ACGAACGCTGGCTAAAGCGGCTCAGCGGGGAGAGCGTGTGCCTCGCCCCGGGGATTTGCCGGAAGGCAAGCATGAGCGGG TAATGATCCATCCTCTTTTGAGTGCTGCCTGA Protein sequence : MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQVNTRTGRCISGN TVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEI LSLRWEHIDLQHGVAHLPMTKNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRH EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVPYPACIESVNEGSDGCCGFRV HLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVPRPGDLPEGKHERVMIHPLLSAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| rci | AAC38070.2 | Rci | Not tested | SPI-7 | Protein | 7e-168 | 100 |
| rci | NP_458640.1 | shufflon-specific DNA recombinase | Not tested | SPI-7 | Protein | 1e-167 | 100 |
| rci | NP_807850.1 | shufflon-specific DNA recombinase | Not tested | SPI-7 | Protein | 1e-167 | 100 |
| unnamed | ABR13530.1 | site-specific recombinase | Not tested | PAGI-8 | Protein | 1e-36 | 43 |
