|
Name : pilR Accession : NP_458634.1 Strain : Salmonella enterica CT18 Genome accession: NC_003198 Putative virulence/resistance : Virulence Product : putative membrane protein Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 4430822 - 4431907 bp Length : 1086 bp Strand : + Note : Previously sequenced Salmonella typhi PilR TR:Q9ZIV0 (EMBL:AF000001) (361 aa) fasta scores: E(): 0, 100.0% id in 361 aa. Also similar to Escherichia coli plasmid IncI1 R64 integral membrane protein pilR TR:O07376 (EMBL:D88588) (365 aa) fasta scores: E(): DNA sequence : ATGAGTCCTTTATACCGTCTTCGCCGGGCGCTGGCGCGACGTTTTTTTACGTCCGGATACCGTCTGCGTTTTTACCGCAT GCTGTCGTTGCAGATGAGAAATGGCGTGAAGTTGTTAGAGGCGCTGGAGCAAATCAGCAATATGTATACCGATTTTGGGC AGCGGACTCATGGTTTCGGTTTTCTGGTGGACGACTGCCGGGCGGCACTCACTGACAACAGCGGGGATAACTCCCTTGAG CATGCTCTTGCAAACTGGGTTCCGGCGGAGGAGGCGGCGCTCATCAGCGCGGGTATGTTCAGTGGTCGGTTACCTGAGGC GCTCGCAGAGGCGGAAATCCTGATTGACTGCCGGCGGCGTATCCGACAGGCGATCATGAGGATGGCCGTTTATCCCCTAG GTTGCATTGCGATGCTCGGTGGCACGCTGGGTGTTATTCAGACGCAGCTTATTCCAACGCTGGCCGGGATGTCAGATCCG CAGACATGGACCGGAGTGCTGGGAAGCCTTAACGGCCTGCTGATTTTTTTTACTGAGCATGGCGTGGTGATGGGGGCCGG GCTGGCACTGTTGGTCGCATGGACCAGGTGGTCCCTGTCGAACTGGATACGTCCGGACCGTCTGCGTCGTCTTGCGGACA GACATGTACCCTGGGCGGTTTACAGTGATATTCAGGGCGCGATTTTTCTCATCAATATGGGGGCTCTGCTGTGCGCTGGG GTCAGAACCCTGACTGCGCTGCAGGTTATCCACCGCTTTGCTTCTCCCTGGCTCGTTGTACGTCTGAACGCAGTGATGGA GGAAGTGGAGGAGGGGGCCTCTTTTGGTATGGCGCTGCGTGAATGTGGTTATGCCTTCCCCTCAAAAGAAGCCGTGAACT ATCTCTCTATGGTCAGTGGGGACGGGGCCGCTCAGATGATTGCGCGCTTTGGGCAGGAATGGCTCGAGGAAACTGTGAAG CGAGTTAACCGACGGGGAATAGCCGTGATGCTGTTCTCAATGGTGATGTTATTTGCGCTTATTGGCGTTGTGGTCGTGGC GGTGATTGAGGCGACTTCGATGACCGAGAGTATGGGGCAGTACTGA Protein sequence : MSPLYRLRRALARRFFTSGYRLRFYRMLSLQMRNGVKLLEALEQISNMYTDFGQRTHGFGFLVDDCRAALTDNSGDNSLE HALANWVPAEEAALISAGMFSGRLPEALAEAEILIDCRRRIRQAIMRMAVYPLGCIAMLGGTLGVIQTQLIPTLAGMSDP QTWTGVLGSLNGLLIFFTEHGVVMGAGLALLVAWTRWSLSNWIRPDRLRRLADRHVPWAVYSDIQGAIFLINMGALLCAG VRTLTALQVIHRFASPWLVVRLNAVMEEVEEGASFGMALRECGYAFPSKEAVNYLSMVSGDGAAQMIARFGQEWLEETVK RVNRRGIAVMLFSMVMLFALIGVVVVAVIEATSMTESMGQY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pilR | NP_458634.1 | putative membrane protein | Virulence | SPI-7 | Protein | 3e-153 | 100 |
| pilR | NP_807845.1 | hypothetical protein | Virulence | SPI-7 | Protein | 3e-153 | 100 |
| pilR | AAC98886.2 | PilR | Virulence | SPI-7 | Protein | 3e-153 | 100 |
| pilR | YP_001402684.1 | type IV pilus biogenesis protein PilR | Virulence | YAPI | Protein | 3e-59 | 50 |
| YE3501 | YP_001007662.1 | type IV pilus integral membrane protein | Virulence | YAPI | Protein | 1e-66 | 50 |
| pilR | CAF28491.1 | putative integral inner membrane protein | Virulence | YAPI | Protein | 1e-59 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pilR | NP_458634.1 | putative membrane protein | VFG2314 | Protein | 5e-67 | 50 |
