Gene Information

Name : ssB
Accession : NP_458627.1
Strain : Salmonella enterica CT18
Genome accession: NC_003198
Putative virulence/resistance : Virulence
Product : single strand binding protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0629
EC number : -
Position : 4422151 - 4422687 bp
Length : 537 bp
Strand : +
Note : Previously sequenced Salmonella typhi single strand binding protein ssB TR:Q9RHF4 (EMBL:AF000001) (178 aa) fasta scores: E(): 0, 100.0% id in 178 aa. Also highly similar to other single-stranded DNA-binding proteins including: Escherichia coli SW:SSB_ECOL

DNA sequence : 
ATGGCTTCTAAAGGTGTAAACAAAGTTATTCTGGTGGGAAATCTGGGACAGGATCCTGAGGTGCGTTATATGCCAAATGG
CGGTGCCGTGGTAAACCTCAGTCTGGCAACCTCAGATACCTGGACAGATAAACAGACCGGTGACAAAAAAGAGCGCACTG
AATGGCACAGGGTGGTTCTTTACGGCAAGCTGGCCGAAATTGCCAGTGAGTATCTGCGTAAGGGCTCCCAGGTATACATC
GAAGGTGCATTACGCACCCGCAAATGGACGGATCAGTCTGGCGTTGAAAAGTACACTACAGAAGTGGTCGTCAGCCAGTC
AGGTACGATGCAGATGTTGGGCGGACGAAATAGTGCGGGAAGTGGGCAGCAACAGGGCGGCTGGGGTCAGCCTCAGCAAC
CAGCAGCGCCTTCTCACAGCGGGATGCCACCTCAACAGCATCCTGCAAATGAGCCGCCAATGGACTTCGACGATGATATC
CCGTTCGCGCCGTTCGGGCACAGTGTGGCCAGACATGCGCTTTATGTGCTGTCCTGA

Protein sequence : 
MASKGVNKVILVGNLGQDPEVRYMPNGGAVVNLSLATSDTWTDKQTGDKKERTEWHRVVLYGKLAEIASEYLRKGSQVYI
EGALRTRKWTDQSGVEKYTTEVVVSQSGTMQMLGGRNSAGSGQQQGGWGQPQQPAAPSHSGMPPQQHPANEPPMDFDDDI
PFAPFGHSVARHALYVLS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssB NP_458627.1 single strand binding protein Not tested SPI-7 Protein 3e-69 100
ssb NP_807839.1 single-stranded DNA-binding protein Not tested SPI-7 Protein 3e-69 100
ssb AAF14810.1 single strand binding protein Not tested SPI-7 Protein 2e-69 100
ssb1 YP_005176252.1 single-stranded DNA-binding protein Not tested ICEPmu1 Protein 2e-34 56
ssb AAC26638.1 single-strand binding protein Not tested SPI-4 Protein 2e-35 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssB NP_458627.1 single strand binding protein VFG0576 Protein 2e-43 66