Gene Information

Name : STY3354
Accession : NP_457570.1
Strain : Salmonella enterica CT18
Genome accession: NC_003198
Putative virulence/resistance : Virulence
Product : probable two-component system response regulator.
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3198301 - 3198960 bp
Length : 660 bp
Strand : +
Note : Similar to Escherichia coli transcriptional regulatory protein basr/pmra basr or pmrA SW:BASR_ECOLI (P30843) (222 aa) fasta scores: E(): 0, 46.8% id in 216 aa; Orthologue of E. coli YGIX_ECOLI; Fasta hit to YGIX_ECOLI (219 aa), 88% identity in 218 aa over

DNA sequence : 
ATGCGAATTTTACTGGTAGAAGATGACACACTTATTGGCGATGGCATAAAAGCAGGTCTGAGTAAAATGGGTTTCAGCGT
CGACTGGTTTACCGAGGGACGTCCGGGCAAAGAGGCGCTTTACAGCGCGCCTTATGATGCGGTCATTTTAGATTTAACGC
TGCCAGGAATGGACGGACGGGATATTTTGCGCGAATGGCGCGAAAAGGGTAAACAGGAACCAGTACTGATCCTGACGGCG
CGCGACGCGTTAGCAGAGCGCGTCGAGGGGCTACGTCTGGGCGCCGATGACTATTTATGTAAACCTTTCGCGCTCATTGA
GGTCGCCGCCCGTCTGGAGGCGCTGGTACGCCGCGCCAGCGGTCAGGCCAGTAGCGAATTGCGCCACGGCCAGGTGACGC
TCAATCCAGGCAATCTCGTCGCGACGCTTGCCGGCGAACCGCTGGCCCTAAAACCAAAAGAGTTCGCGTTGCTGGAACTC
TTACTGCGCAACAAAGGTCGCGTGCTACCGCGCAAGCTTATTGAAGAGAAGCTGTATAACTGGGATGACGACGTGTCCAG
CAATGCAGTGGAAGTCCATGTTCATCATTTACGCCGCAAGCTCGGCAGCGAATTTATTCGCACCGTACACGGCATCGGCT
ACACCCTGGGTGACGCATGA

Protein sequence : 
MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGKQEPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRASGQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLEL
LLRNKGRVLPRKLIEEKLYNWDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGYTLGDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-34 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STY3354 NP_457570.1 probable two-component system response regulator. BAC0487 Protein 1e-34 46
STY3354 NP_457570.1 probable two-component system response regulator. BAC0308 Protein 2e-30 43
STY3354 NP_457570.1 probable two-component system response regulator. BAC0638 Protein 6e-26 42
STY3354 NP_457570.1 probable two-component system response regulator. NC_002516.2.879194.p Protein 2e-23 41
STY3354 NP_457570.1 probable two-component system response regulator. BAC0347 Protein 3e-28 41
STY3354 NP_457570.1 probable two-component system response regulator. BAC0083 Protein 2e-30 41
STY3354 NP_457570.1 probable two-component system response regulator. BAC0111 Protein 3e-28 41
STY3354 NP_457570.1 probable two-component system response regulator. BAC0197 Protein 5e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STY3354 NP_457570.1 probable two-component system response regulator. VFG0473 Protein 7e-35 47
STY3354 NP_457570.1 probable two-component system response regulator. VFG1390 Protein 2e-26 41