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Name : steB Accession : NP_457344.1 Strain : Salmonella enterica CT18 Genome accession: NC_003198 Putative virulence/resistance : Virulence Product : outer membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 2949638 - 2952337 bp Length : 2700 bp Strand : + Note : Similar to Salmonella typhimurium outer membrane usher protein StfC TR:O87658 (EMBL:AF093503) (885 aa) fasta scores: E(): 0, 53.3% id in 891 aa. Contains a possible N-terminal signal sequence. DNA sequence : TTGATGAATAACACATGGAAAAGTGTTCTTTGCCCAATAGCGTGTGGAGTGGGAATGCTTCTAAGCGCCTCCCCTTATAG CGCGTCAGGCAAAGACATCGAATTTAATACCGATTTCCTCGATGTAAAAAATCGCGATAACGTCAACATTGCACAGTTTT CTCGTAAGGGTTTTATCCTGCCAGGCGTCTACCTTTTACAAATTAAAATTAACGGACAGACTCTGCCGCAGGAATTTCCT GTTAACTGGGTTATTCCAGAACATGATCCACAAGGAAGTGAGGTTTGCGCAGAACCAGAATTAGTTACGCAATTGGGTAT AAAGCCGGAACTCGCGGAAAAACTCGTCTGGATAACGCACGGTGAACGACAATGTCTGGCGCCAGATTCACTGAAAGGCA TGGATTTTCAGGCTGACCTGGGACACTCCACGCTGCTGGTGAATTTACCCCAGGCGTATATGGAATACAGCGATGTCGAC TGGGACCCACCCGCCCGCTGGGATAATGGTATTCCCGGCATCATTCTGGATTACAACATTAATAATCAGCTCCGCCACGA TCAAGAAAGCGGCAGCGAAGAGCAAAGCATCAGCGGCAACGGGACGTTAGGCGCGAACCTGGGCGCATGGCGACTACGGG CCGACTGGCAGGCCAGCTACGACCATCGTGACGATGACGAGAGCACTTCCACCCTCCACGATCAGAGCTGGAGCCGCTAC TACGCCTATCGCGCACTACCGACGCTCGGGGCCAAACTTACGCTGGGCGAAAGCTATCTCCAGTCCGATGTTTTCGACAG CTTTAACTATATCGGTGCCAGCGTCGTTTCTGACGATCAGATGCTGCCGCCGAAACTGCGCGGCTATGCGCCGGAGATCG TGGGCATTGCGCGCTCTAATGCAAAAGTCAAAGTCTCCTGGCAGGGGCGCGTACTGTATGAAACGCAGGTGCCCGCAGGA CCGTTCCGTATTCAGGATCTCAACCAGTCCGTTTCCGGTACGTTGCACGTCACCGTGGAAGAGCAGAACGGTCAGACCCA GGAGTTTGACGTTAACACCGCATCGGTTCCCTTCCTGACGCGCCCCGGCATGGTGCGCTACAAGATGGCGCTGGGCCGCC CGCAGGACTGGGATCATCACCCTATTACCGGCACATTCGCCTCGGCGGAGGCTTCGTGGGGGGTCACCAACGGCTGGTCG CTCTATGGCGGCGCAATTGGAGAAAGCAACTATCAGGCCGTGGCGCTGGGAAGCGGTAAGGATCTTGGCGTGGTGGGCGC GGTGGCGGTGGACATTACGCACTCCATCGCCCACATGCCGCAAGACGACGGGTTTGACGGCGAAACGCTGCAGGGTAACT CATATCGCATCAGCTACTCCCGTGACTTTGATGAAATCGACAGCCGACTAACCTTTGCCGGATACCGCTTCTCAGAAAAG AACTTTATGAGCATGAGCGACTATCTGGATGCGAAAACCTATCATCATCTCAATGCCGGTCACGAAAAAGAACGCTATAC GGTCACCTATAACCAGAACTTCCGTGAACAGGGCATGAGCGCCTATTTCAGCTACTCACGCAGTACCTTCTGGGACAGCC CGGATCAGAGTAACTATAACCTGTCTCTTTCCTGGTACTTCGACTTAGGGTCGATAAAAAATCTCAGTGCGTCGCTGAAC GGCTATCGCAGCGAATATAACGGTGATAAAGATGATGGCGTCTATATCTCGCTGTCTGTTCCCTGGGGCAATGATTCCAT CAGCTACAACGGTACGTTTAACGGTAGTCAACACCGTAATCAGCTCGGCTATTCCGGCCACAGCCAGAACGGCGATAACT GGCAGCTTCACGTCGGGCAGGATGAACAAAGCGCGCAGGCAGACGGTTATTACAGCCATCAGGGCGCGCTGACGGACATC GATCTGAGCGCGGATTATGAAGAAGGATCGTACCGTTCGCTGAGTATGTCGCTGCGCGGCGGCATGACGCTGACCACCCA GGGCGGCGCGCTACACCGGGGAAGTTTAGCGGGCAGCACACGTTTGCTGGTTGATACCGACGGCATTGCGGACGTCCCCG TTAGCGGTAACGGCTCGCCAACCTCAACCAACATTTTCGGCAAGGCCGTGATTGCGGATGTCGGAAGCTATTCGCGCAGC CTGGCGCGTATCGATCTGAACAAATTGCCGGAGAAGGCGGAAGCTACTAAGTCGGTTGTGCAGATCACGCTCACCGAAGG CGCCATCGGCTACCGTCACTTTGACGTGGTCAGCGGCGAGAAAATGATGGCGGTTTTCCGGCTAGCAGACGGCGACTTCC CACCTTTCGGCGCCGAAGTGAAAAACGAGCGCCAGCAGCAGTTGGGCCTGGTGGCCGATGACGGCAACGCCTGGCTGGCG GGCGTAAAAGCCGGGGAAACATTGAAAGTCTTCTGGGATGGCGCGGCGCAGTGTGAAGCATCACTCCCGCCCACGTTTAC ACCAGAGCTATTGGCCAACGCGCTATTGCTGCCGTGCAAAATGCTGGAAGGTCAGCCCCCCACCGCACCGCAGAAAAGTT CTCCGCTGCCTGCGCAACCGCTAATCCAGGAACATACGCAAACCGATGGCCAACCGGCCGCGCCGGTGGCGACAACCACT CAAACCCCGCCCATACCGCTGGCTGACAACCATGCGGTGAATCGCAAGGATATGGAATAA Protein sequence : MMNNTWKSVLCPIACGVGMLLSASPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFP VNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVD WDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDESTSTLHDQSWSRY YAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAG PFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWS LYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEK NFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLN GYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQSAQADGYYSHQGALTDI DLSADYEEGSYRSLSMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRS LARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLA GVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTT QTPPIPLADNHAVNRKDME |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 1e-171 | 46 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 5e-168 | 44 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 1e-166 | 44 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 2e-166 | 44 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 9e-168 | 44 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 1e-167 | 44 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 9e-168 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| steB | NP_457344.1 | outer membrane usher protein | VFG1548 | Protein | 3e-168 | 44 |
| steB | NP_457344.1 | outer membrane usher protein | VFG0884 | Protein | 4e-168 | 44 |
| steB | NP_457344.1 | outer membrane usher protein | VFG0895 | Protein | 6e-168 | 44 |
