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Name : spaP Accession : NP_457284.1 Strain : Salmonella enterica CT18 Genome accession: NC_003198 Putative virulence/resistance : Virulence Product : secretory protein (associated with virulence) Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4790 EC number : - Position : 2885671 - 2886345 bp Length : 675 bp Strand : - Note : Previously sequenced Salmonella typhi surface presentation of antigens protein SpaP SW:SPAP_SALTI (Q56023) (224 aa) fasta scores: E(): 0, 100.0% id in 224 aa. Also similar to many others e.g. Shigella flexneri SW:SPAP_SHIFL (P35529) (216 aa) fasta scores: DNA sequence : ATGGGGAATGATATCTCATTAATTGCCTTACTGGCATTTTCCACCCTGTTGCCATTTATTATTGCGTCAGGAACCTGTTT CGTTAAATTTTCTATTGTATTTGTCATGGTGCGTAACGCCCTGGGATTGCAGCAGATACCTTCAAATATGACGCTTAACA GCGTCGCATTGCTGCTTTCTATGTTTGTTATGTGGCCAATAATGCATGATGCCTACGTCTATTTTGAGGACGAAGATGTC ACCTTTAATGATATTTCGTCATTAAGTAAACACGTTGATGAAGGTCTGGATGGTTATCGCGATTATCTGATCAAATATTC AGATCGCGAGTTAGTTCAGTTTTTTGAAAACGCGCAACTGAAGCGTCAGTATGGAGAAGAGACCGAGACGGTAAAGCGTG ACAAAGATGAAATTGAAAAACCATCAATATTTGCGTTATTACCTGCTTATGCGCTGAGCGAAATAAAAAGCGCGTTTAAA ATTGGTTTTTATCTCTATTTGCCCTTTGTTGTCGTCGACCTGGTGGTATCCAGCGTGCTACTGGCGCTGGGGATGATGAT GATGAGTCCGGTGACGATATCTACACCTATTAAGCTGGTGCTTTTTGTCGCGCTTGATGGCTGGACCTTACTGTCTAAGG GATTGATATTACAGTATATGGACATTGCAACATGA Protein sequence : MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLSMFVMWPIMHDAYVYFEDEDV TFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFK IGFYLYLPFVVVDLVVSSVLLALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYMDIAT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| spaP | NP_457284.1 | secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 1e-85 | 100 |
| spaP | NP_806493.1 | surface presentation of antigens protein SpaP | Virulence | SPI-1 | Protein | 1e-85 | 100 |
| spaP | YP_217809.1 | surface presentation of antigens protein SpaP | Virulence | SPI-1 | Protein | 1e-85 | 99 |
| spaP | NP_461811.1 | surface presentation of antigens protein SpaP | Virulence | SPI-1 | Protein | 1e-85 | 99 |
| spaP | NP_311752.1 | surface presentation of antigens protein SpaP | Not tested | LIM | Protein | 1e-55 | 69 |
| epaP | AAZ31293.1 | EpaP | Virulence | ETT2 | Protein | 4e-54 | 68 |
| ysaR | AAS66846.1 | YsaR | Not tested | SSR-1 | Protein | 4e-51 | 60 |
| spaP | AAS66865.1 | SpaP | Not tested | SSR-2 | Protein | 1e-51 | 59 |
| escR | AAK26700.1 | EscR | Virulence | LEE | Protein | 4e-27 | 46 |
| escR | YP_003223490.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 6e-27 | 46 |
| escR | AAL57527.1 | EscR | Virulence | LEE | Protein | 4e-27 | 46 |
| escR | YP_003232138.1 | type III secretion system protein | Virulence | LEE | Protein | 6e-27 | 46 |
| escR | CAC81847.1 | EscR protein | Virulence | LEE II | Protein | 4e-27 | 46 |
| escR | CAI43889.1 | EscR protein | Virulence | LEE | Protein | 4e-27 | 46 |
| escR | AAC38369.1 | EscR | Virulence | LEE | Protein | 2e-26 | 45 |
| escR | AAC31528.1 | L0049 | Virulence | LEE | Protein | 4e-27 | 45 |
| escR | YP_003236103.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 6e-27 | 45 |
| escR | ACU09473.1 | type III secretion system protein EscR | Virulence | LEE | Protein | 4e-27 | 45 |
| escR | NP_290283.1 | type III secretion system protein | Virulence | LEE | Protein | 6e-27 | 45 |
| ECs4583 | NP_312610.1 | type III secretion system protein | Virulence | LEE | Protein | 4e-27 | 45 |
| unnamed | AAL06354.1 | EscR | Virulence | LEE | Protein | 2e-25 | 44 |
| escR | AFO66317.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 1e-23 | 43 |
| escR | AFO66400.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 1e-23 | 43 |
| lscR | AAO18040.1 | LscR | Virulence | TTSS locus | Protein | 1e-24 | 43 |
| YPO0270 | YP_002345352.1 | type III secretion system protein | Virulence | Not named | Protein | 5e-25 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| spaP | NP_457284.1 | secretory protein (associated with virulence) | VFG0551 | Protein | 5e-86 | 99 |
| spaP | NP_457284.1 | secretory protein (associated with virulence) | VFG1012 | Protein | 6e-48 | 61 |
| spaP | NP_457284.1 | secretory protein (associated with virulence) | VFG2455 | Protein | 4e-48 | 60 |
| spaP | NP_457284.1 | secretory protein (associated with virulence) | VFG1773 | Protein | 3e-52 | 59 |
| spaP | NP_457284.1 | secretory protein (associated with virulence) | VFG0394 | Protein | 3e-27 | 46 |
| spaP | NP_457284.1 | secretory protein (associated with virulence) | VFG0827 | Protein | 2e-27 | 45 |
| spaP | NP_457284.1 | secretory protein (associated with virulence) | VFG0715 | Protein | 1e-26 | 45 |
| spaP | NP_457284.1 | secretory protein (associated with virulence) | VFG0188 | Protein | 8e-26 | 43 |
