Gene Information

Name : STY2187
Accession : NP_456540.1
Strain : Salmonella enterica CT18
Genome accession: NC_003198
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 2028944 - 2029681 bp
Length : 738 bp
Strand : +
Note : Similar to Salmonella typhimurium flagellar biosynthetic protein FliP fliP or flaR SW:FLIP_SALTY (P54700) (245 aa) fasta scores: E(): 0, 99.6% id in 245 aa. Contains hydrophobic, probable membrane-spanning regions; Orthologue of E. coli fliP (FLIP_ECOLI);

DNA sequence : 
ATGCGCCGTTTGTTATTCCTTTCTCTGGCGGGTCTGTGGCTTTTTAGTCCCGCCGCCGCTGCGCAACTGCCGGGGCTTAT
CAGCCAACCATTAGCGGGCGGAGGCCAAAGCTGGTCATTATCCGTCCAGACGCTGGTTTTCATCACCTCGCTGACGTTTC
TGCCGGCGATTTTACTGATGATGACGAGCTTCACGCGTATCATCATTGTTTTTGGCTTGTTGCGTAACGCGCTGGGCACG
CCCTCGGCACCGCCAAATCAGGTGTTACTCGGACTGGCGTTGTTTTTGACCTTTTTTATTATGTCGCCCGTCATTGACAA
GATTTACGTGGATGCTTACCAGCCGTTTAGCGAGCAGAAAATTTCTATGCAGGAAGCGCTGGATAAAGGCGCGCAACCGT
TACGCGCGTTCATGCTGCGCCAAACCCGCGAAGCCGATCTGGCGCTGTTTGCCCGTCTGGCCAATAGCGGTCCGTTACAG
GGACCGGAAGCAGTACCGATGCGTATCCTCCTGCCCGCTTATGTCACCAGCGAATTAAAGACGGCGTTTCAGATCGGTTT
TACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATCGCCAGCGTACTGATGGCGTTAGGGATGATGATGGTGCCGC
CAGCGACAATCGCCCTGCCGTTTAAGCTGATGCTGTTTGTGCTGGTCGATGGTTGGCAATTGCTTGTGGGGTCGCTGGCC
CAAAGCTTTTACAGTTAG

Protein sequence : 
MRRLLFLSLAGLWLFSPAAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGT
PSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQ
GPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA
QSFYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-29 43
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-29 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-26 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-26 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-26 42
escR AAC31528.1 L0049 Virulence LEE Protein 9e-31 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-30 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 9e-31 42
escR AAC38369.1 EscR Virulence LEE Protein 6e-30 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 5e-30 42
escR AAK26700.1 EscR Virulence LEE Protein 9e-31 42
escR AAL57527.1 EscR Virulence LEE Protein 9e-31 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-30 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 9e-31 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-30 42
escR CAI43889.1 EscR protein Virulence LEE Protein 9e-31 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-30 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-21 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 8e-22 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-29 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 6e-30 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-30 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 6e-30 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-29 41
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-30 41
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-30 41
unnamed AAL06354.1 EscR Virulence LEE Protein 1e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STY2187 NP_456540.1 flagellar biosynthetic protein FliP VFG2338 Protein 1e-91 86
STY2187 NP_456540.1 flagellar biosynthetic protein FliP VFG2494 Protein 2e-75 69
STY2187 NP_456540.1 flagellar biosynthetic protein FliP VFG1259 Protein 2e-64 60
STY2187 NP_456540.1 flagellar biosynthetic protein FliP VFG2016 Protein 7e-60 56
STY2187 NP_456540.1 flagellar biosynthetic protein FliP VFG0188 Protein 1e-33 43
STY2187 NP_456540.1 flagellar biosynthetic protein FliP VFG0394 Protein 2e-31 42
STY2187 NP_456540.1 flagellar biosynthetic protein FliP VFG0827 Protein 5e-31 42
STY2187 NP_456540.1 flagellar biosynthetic protein FliP VFG0715 Protein 3e-30 42
STY2187 NP_456540.1 flagellar biosynthetic protein FliP VFG0519 Protein 2e-30 41
STY2187 NP_456540.1 flagellar biosynthetic protein FliP VFG0044 Protein 2e-33 41