Gene Information

Name : spiC
Accession : NP_456135.1
Strain : Salmonella enterica CT18
Genome accession: NC_003198
Putative virulence/resistance : Virulence
Product : putative pathogenicity island 2 secreted effector protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1646269 - 1646652 bp
Length : 384 bp
Strand : -
Note : Similar to Salmonella typhimurium secreted effector protein, SpiC TR:P74863 (EMBL:U51927) (133 aa) fasta scores: E(): 0, 100.0% id in 127 aa. Note discrepency in position of translational start site.

DNA sequence : 
ATGCTGGCAGTTTTAAAAGGCATTCCATTAATTCAGGATATCAGGGCCGAAGGTAATAGCCGATCCTGGATAATGACTAT
TGATGGGCATCCTGCCAGAGGAGAAATTTTCTCAGAAGCATTTTCTATTTCTTTGTTCTTAAATGACCTGGAAAGCTTAC
CTAAGCCTTGTCTTGCCTATGTGACACTACTGCTTGCAGCACACCCGGACGTCCATGACTATGCTATACAGCTCACAGCG
GATGGGGGATGGTTAAACGGTTATTATACCACAAGTAGTAGCTCTGAGCTTATTGCTATTGAGATAGAAAAACACCTGGC
TTTAACTTGCATTTTAAAAAATGTAATACGCAATCACCATAAACTTTATTCGGGTGGGGTATAA

Protein sequence : 
MLAVLKGIPLIQDIRAEGNSRSWIMTIDGHPARGEIFSEAFSISLFLNDLESLPKPCLAYVTLLLAAHPDVHDYAIQLTA
DGGWLNGYYTTSSSSELIAIEIEKHLALTCILKNVIRNHHKLYSGGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
spiC AEZ06299.1 pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 1e-49 100
spiC NP_456135.1 putative pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 1e-49 100
spiC NP_805064.1 pathogenicity island secreted effector protein Virulence SPI-2 Protein 1e-49 100
ssaB NP_460358.1 secreted effector protein Virulence SPI-2 Protein 1e-49 100
spiC AAC44300.1 SpiC Virulence SPI-2 Protein 9e-50 100
spiC AEZ06297.1 pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 4e-49 99
spiC AEZ06300.1 pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 4e-49 99
spiC AEZ06295.1 pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 2e-49 99
spiC AEZ06296.1 pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 2e-49 99
spiC AEZ06298.1 pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 1e-49 99
ssaB YP_216401.1 secretion system apparatus protein SsaB Virulence SPI-2 Protein 2e-49 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
spiC NP_456135.1 putative pathogenicity island 2 secreted effector protein VFG0494 Protein 3e-50 100