Gene Information

Name : sscA
Accession : NP_456129.1
Strain : Salmonella enterica CT18
Genome accession: NC_003198
Putative virulence/resistance : Virulence
Product : putative Type III secretion system chaperone protein
Function : -
COG functional category : S : Function unknown
COG ID : COG1729
EC number : -
Position : 1641736 - 1642209 bp
Length : 474 bp
Strand : -
Note : Similar to Salmonella typhimurium putative secretion chaperone SscA TR:O84946 (EMBL:AF020808) (157 aa) fasta scores: E(): 0, 98.1% id in 157 aa, and to Escherichia coli CesD TR:O52134 (EMBL:AF022236) (151 aa) fasta scores: E(): 5.6e-09, 29.5% id in 139 aa

DNA sequence : 
ATGAAAAAAGACCCGACCCTACAACAGGCACATGACACGATGCGATTTTTCCGGCGTGGCGGCTCGCTGCGTATGTTGTT
GGATGACGATGTTACACAGCCGCTTAATACTGTGTATCGCTATGCCATGCAGCTTATGGAGGTAAAAGAATTCGCCGGCG
CAGCGCGACTTTTTCAATTGCTGACGATATATGATGCCTGGTCATTTGACTACTGGTTTCGGTTAGGGGAATGCTGCCAG
GCTCAAAAACATTGGGGGGAAGCGATATACGCTTATGGACGCGCGGCACAAATTAAGATTGATGCGCCGCAGGCGCCATG
GGCCGCAGCGGAATGCTATCTCGCGTGTGATAACGTCTGTTATGCAATAAAAGCGTTAAAAGCCGTGGTGCGTATTTGCG
GCGAGGTCAGTGAACATCAAATCCTCCGACTACGTGCAGAAAAGATGTTACAGCAGCTTTCTGACAGGAGCTAA

Protein sequence : 
MKKDPTLQQAHDTMRFFRRGGSLRMLLDDDVTQPLNTVYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ
AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRLRAEKMLQQLSDRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sscA NP_456129.1 putative Type III secretion system chaperone protein Virulence SPI-2 Protein 2e-70 100
sscA NP_805070.1 type III secretion system chaperone protein Virulence SPI-2 Protein 2e-70 100
sscA NP_460364.1 secretion system chaperone Virulence SPI-2 Protein 7e-69 99
SC1420 YP_216407.1 secretion system chaperone protein SscA Virulence SPI-2 Protein 2e-69 99
sscA AAC28880.1 putative secretion chaperone Virulence SPI-2 Protein 5e-69 99
sscA CAA12186.1 SscA Virulence SPI-2 Protein 5e-69 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sscA NP_456129.1 putative Type III secretion system chaperone protein VFG0500 Protein 2e-69 99