Gene Information

Name : sseD
Accession : NP_456127.1
Strain : Salmonella enterica CT18
Genome accession: NC_003198
Putative virulence/resistance : Virulence
Product : putative pathogenicity island effector protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1639676 - 1640263 bp
Length : 588 bp
Strand : -
Note : Similar to Salmonella typhimurium SseD TR:Q9R803 (EMBL:AJ224892) (195 aa) fasta scores: E(): 0, 98.5% id in 195 aa

DNA sequence : 
ATGGAAGCGAGTAACGTAGCACTGGTATTACCAGCGCCTTCCTTGTTAACGCCTTCTTCCACTCCATCTCCCTCCGGGGA
GGGAATGGGTACTGAATCAATGCTTCTGTTATTTGATGATATCTGGATGAAGCTAATGGAGCTTGCCAAAAAGCTGCGCG
ATATCATGCGCAGCTATAACGTAGAAAAACAACGACTGTCCTGGGAACTGCAAGTCAATGTTTTGCAGACGCAAATGAAA
ACAATTGATGAAGCGTTTAGAGCATCAATGATTACTGCGGGTGGCGCCATGTTGTCGGGAGTGCTGACGATAGGATTAGG
GGCTGTAGGCGGGGAAACCGGTCTTATAGCGGGTCAAGCCGTAGGACACACCGCTGGGGGAGTCATGGGCCTGGGGTCCG
GTGTAGCGCAACGTCAAAGTGATCAAGATAAAGCGATTGCCGACCTGCAACAAAATGGGGCACAATCTTATAATAAATCC
CTGACGGACATTATGGAGAAAGCAACTGAAATTATGCAGCAAATCATCGGCGTGGGGTCGTCACTGGTTACGGTTCTTGC
TGAAATACTCCGGGCATTAACGAGGTAA

Protein sequence : 
MEASNVALVLPAPSLLTPSSTPSPSGEGMGTESMLLLFDDIWMKLMELAKKLRDIMRSYNVEKQRLSWELQVNVLQTQMK
TIDEAFRASMITAGGAMLSGVLTIGLGAVGGETGLIAGQAVGHTAGGVMGLGSGVAQRQSDQDKAIADLQQNGAQSYNKS
LTDIMEKATEIMQQIIGVGSSLVTVLAEILRALTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseD NP_456127.1 putative pathogenicity island effector protein Virulence SPI-2 Protein 4e-75 100
sseD NP_805072.1 pathogenicity island effector protein Virulence SPI-2 Protein 4e-75 100
sseD NP_460366.1 translocation machinery component Virulence SPI-2 Protein 7e-75 99
sseD CAA12188.1 SseD Virulence SPI-2 Protein 5e-75 99
sseD AAC28882.1 SseD Virulence SPI-2 Protein 3e-74 98
sseD YP_216409.1 secretion system effector protein SseD Virulence SPI-2 Protein 9e-73 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sseD NP_456127.1 putative pathogenicity island effector protein VFG0502 Protein 2e-75 99