Gene Information

Name : sscB
Accession : NP_456125.1
Strain : Salmonella enterica CT18
Genome accession: NC_003198
Putative virulence/resistance : Virulence
Product : putative pathogenicity island protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG5010
EC number : -
Position : 1638771 - 1639205 bp
Length : 435 bp
Strand : -
Note : Similar to Salmonella typhimurium SscB TR:O84950 (EMBL:AF020808) (144 aa) fasta scores: E(): 0, 99.3% id in 142 aa

DNA sequence : 
ATGATGATGAAAGAAGATCAGAAAAATAAAATACCCGAAGACATTCTGAAACAGCTATTATCCGTTGATCCGGAAACCGT
TTATGCCAGTGGTTACGCCTCATGGCAGGAGGGGGATTATTCGCGCGCCGTAATCGATTTTAGCTGGCTGGTGATGGCCC
AGCCATGGAGTTGGCGTGCCCATATTGCATTGGCTGGCACCTGGATGATGCTTAAAGAATACACGACGGCCATTAATTTC
TATGGACATGCCTTGATGCTGGATGCCAGCCATCCAGAACCGGTTTACCAAACGGGCGTCTGTCTCAAAATGATGGGGGA
ACCCGGGTTGGCGAGAGAGGCTTTTCAAACCGCAATCAAGATGAGCTATGCGGATGCCTCATGGAGTGAGATTCGCCAGA
ATGCGCAAAAAATGGTTGATACTCTTATTGCTTAA

Protein sequence : 
MMMKEDQKNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINF
YGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQKMVDTLIA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sscB NP_456125.1 putative pathogenicity island protein Virulence SPI-2 Protein 4e-63 100
sscB NP_805074.1 pathogenicity island protein Virulence SPI-2 Protein 4e-63 100
SC1424 YP_216411.1 secretion system chaperone protein SscB Virulence SPI-2 Protein 2e-62 99
sscB NP_460368.1 secretion system chaperone Virulence SPI-2 Protein 2e-62 99
sscB AAC28884.1 SscB Virulence SPI-2 Protein 2e-62 99
sscB CAA12190.1 SscB Virulence SPI-2 Protein 2e-62 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sscB NP_456125.1 putative pathogenicity island protein VFG0504 Protein 6e-63 99