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Name : ssaV Accession : NP_456114.1 Strain : Salmonella enterica CT18 Genome accession: NC_003198 Putative virulence/resistance : Virulence Product : putative type III secretion protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 1631029 - 1633074 bp Length : 2046 bp Strand : - Note : Similar to Salmonella typhimurium secretion system apparatus protein SsaV SW:SSAV_SALTY (P74856) (681 aa) fasta scores: E(): 0, 99.3% id in 681 aa, and to Escherichia coli SepA protein sepA TR:Q47629 (EMBL:Z49933) (643 aa) fasta scores: E(): 0, 49.8% id i DNA sequence : ATGCGTTCATGGTTAGGTGAGGGAATCAGGGCGCAACAGTGGCTCAGTGTATGCGCGGGTCGTCAGGATATGGTTCTGGC GACGGTGTTATTAATCGCTATCGTGATGATGCTGTTACCTTTGCCGACCTGGATGGTTGATATCCTGATTACTATCAACC TTATGTTTTCAGTGATCCTGCTTTTAATTGTTATTTATCTTAGTGACCCTCTCGATTTATCGGTATTTCCGTCTTTATTA CTTATTACTACATTATATCGTTTGTCACTCACAATCAGCACATCACGGCTGGTACTGTTACAACATAATGCCGGTAATAT TGTGGATGCTTTCGGTAAGTTTGTCGTAGGAGGAAATCTCACCGTTGGGTTGGTCGTATTTACCATCATTACTATTGTGC AATTTATTGTCATTACAAAAGGTATCGAGAGGGTGGCGGAAGTTAGCGCACGTTTCTCGCTTGATGGGATGCCAGGCAAA CAAATGAGTATCGATGGCGATTTGCGTGCCGGAGTTATCGATGCAGACCATGCCCGTACATTAAGACAGCACGTCCAGCA GGAAAGCCGTTTTCTCGGTGCGATGGACGGTGCAATGAAATTTGTTAAAGGCGATACGATTGCCGGTATTATTGTTGTTC TGGTGAACATTATCGGCGGTATTATTATCGCTATCGTACAATATGATATGTCGATGAGTGAGGCTGTTCACACTTATAGC GTACTGTCAATCGGAGATGGTTTATGTGGGCAAATTCCATCGCTGCTGATTTCCCTTAGCGCGGGAATTATTGTCACCCG TGTTCCGGGTGAGAAACGCCAGAACCTGGCGACAGAGTTGAGTTCTCAAATTGCCAGACAACCTCAGTCGCTCATATTAA CCGCTGTGGTTTTAATGCTCCTCGCTTTAATTCCTGGCTTTCCTTTTATCACTCTCGCTTTCTTTTCAGCGTTGTTAGCA TTGCCAATTATCCTCATTCGCCGCAAAAAGTCTGTGGTTTCCGCAAATGGCATCGAAGCGCCGGAAAAAGATAGTATGGT TCCCGGCGCATGTCCTCTAATCTTACGTCTTACCCCGACGTTACATTCTGCCGACCTGATTCGTGATATTGATGCCATGA GATGGTTTTTATTTGAGGATACCGGCGTCCCTCTCCCTGAGGTGAATATTGAGGTTTTGCCTGAACCCACCGAAAAATTG ACGGTACTGCTATATCAGGAACCCGTGTTTAGTTTATCTATTCCCGCCCAGGCGGATTATTTATTGATAGGCGCGGACGC TAGTGTGGTGGGTGACAGCCAGACGTTACCGAACGGAATGGGGCAGATCTGTTGGCTTTCAAAAGACATGGCTCATAAGG CGCAAGGTTTTGGACTGGACGTTTTCGCGGGCAGCCAACGTATCTCTGCCTTATTAAAATGTGTCCTGCTTCGGCATATG GGAGAGTTTATTGGTGTTCAGGAAACGCGTTATCTAATGAATGCGATGGAAAAAAACTACTCTGAACTGGTGAAAGAACT TCAGCGCCAGTTACCCATTAATAAAATCGCTGAAACTTTGCAACGGCTTGTATCAGAGCGGGTTTCTATTAGAGATTTAC GTCTTATTTTTGGCACATTAATTGACTGGGCGCCACGCGAAAAAGATGTCCTGATGTTGACAGAATATGTCCGTATCGCG CTTCGCCGTCATATTCTGCGTCGTCTTAATCCGGAAGGAAAACCGCTGCCGATTTTGCGGATCGGCGAAGGTATTGAAAA CCTCGTGCGTGAATCCATTCGCCAGACGGCAATGGGGACCTATACTGCGCTGTCGTCTCGTCATAAGACGCAGATCCTGC AACTTATTGAGCAGGCGCTGAAGCAGTCAGCCAAATTATTCATTGTCACTTCTGTCGACACCCGCCGTTTCTTGCGAAAA ATTACAGAAGCCACCTTGTTCGACGTACCGATTTTGTCATGGCAGGAATTAGGAGAGGAGAGCCTTATACAAGTGGTAGA AAGTATTGACCTTAGCGAAGAGGAGTTGGCGGACAATGAAGAATGA Protein sequence : MRSWLGEGIRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIVIYLSDPLDLSVFPSLL LITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGK QMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLA LPIILIRRKKSVVSANGIEAPEKDSMVPGACPLILRLTPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKL TVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLSKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIA LRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRK ITEATLFDVPILSWQELGEESLIQVVESIDLSEEELADNEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ssaV | NP_456114.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 0.0 | 100 |
| ssaV | NP_805085.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 0.0 | 100 |
| ssaV | CAA70536.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 0.0 | 99 |
| ssaV | NP_460379.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 0.0 | 99 |
| ssaV | YP_216422.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 0.0 | 99 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 3e-134 | 58 |
| escV | AAC38382.1 | EscV | Virulence | LEE | Protein | 7e-108 | 49 |
| unnamed | AAL06368.1 | EscV | Virulence | LEE | Protein | 4e-105 | 48 |
| escV | CAI43875.1 | EscV protein | Virulence | LEE | Protein | 8e-108 | 48 |
| ECs4569 | NP_312596.1 | hypothetical protein | Virulence | LEE | Protein | 2e-107 | 48 |
| escV | YP_003232152.1 | T3SS structure protein EscV | Virulence | LEE | Protein | 2e-107 | 48 |
| escV | YP_003223476.1 | translocator EscV | Virulence | LEE | Protein | 1e-107 | 48 |
| escV | CAC81861.1 | EscV protein | Virulence | LEE II | Protein | 3e-107 | 48 |
| escV | AAC31514.1 | L0035 | Virulence | LEE | Protein | 1e-107 | 48 |
| escV | ACU09459.1 | EscV protein | Virulence | LEE | Protein | 1e-107 | 48 |
| escV | AAK26714.1 | EscV | Virulence | LEE | Protein | 1e-107 | 48 |
| escV | YP_003236089.1 | putative translocator EscV | Virulence | LEE | Protein | 1e-106 | 48 |
| escV | AAL57541.1 | EscV | Virulence | LEE | Protein | 1e-107 | 48 |
| escV | NP_290269.1 | hypothetical protein | Virulence | LEE | Protein | 2e-107 | 48 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 1e-98 | 47 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 6e-99 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ssaV | NP_456114.1 | putative type III secretion protein | VFG0514 | Protein | 0.0 | 99 |
| ssaV | NP_456114.1 | putative type III secretion protein | VFG0729 | Protein | 4e-108 | 49 |
| ssaV | NP_456114.1 | putative type III secretion protein | VFG0813 | Protein | 8e-108 | 48 |
| ssaV | NP_456114.1 | putative type III secretion protein | VFG0064 | Protein | 1e-82 | 42 |
| ssaV | NP_456114.1 | putative type III secretion protein | VFG0384 | Protein | 2e-80 | 41 |
